| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3141 |
|---|
| Symbol | |
|---|
| ID | 7388094 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 2607436 |
|---|
| End bp | 2608350 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643652078 |
|---|
| Product | transcriptional regulator LysR family |
|---|
| Protein accession | YP_002550262 |
|---|
| Protein GI | 222149305 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGAGGCA GCAGCAATAT ACCGCTGGAT TGGGACAAAT TGCGGATTTT CCACGCCGCA
GCCGAAGCCG GGTCCTTTAC CCATGCGGCA GATAAGCTGC ATCTCTCACA ATCGGCAATC
AGCCGACAGG TGAGCGCGCT GGAGCAGGAT GTGGGGGTGA AGCTGTTTCA CCGCCACGCC
CGGGGCCTCA TTCTGACCGA ACAGGGCGAA TTGCTCTATC GCACCGCCCA TGACGTGCTG
CTGAAGCTGG AAACAGTGAA AATGCAGCTG ACTGAGACCA CCGAAAAGCC GAGCGGCAAG
CTGCGCGTCA CCACCACGGT CGGGCTTGGC CAGGGCTGGT TGACTGACAA GGTGCAGGAG
TTCCTGCAAC TTTACCCTGA TATGTCGATC CAGCTGATCC TCGACAACGA GGAACTGGAC
GTCAACATGC GCCACGCCGA TTGCGCCATC CGGTTGCGCC AGCCGCAGCA ATCGGACCTG
ATCCAGCGCA AGCTGTTTAC CGTGCATATG CATGTCTATG CCGCGCCCTC CTATATCAAT
CGCTATGGGG AGCCGCAGAC CATCGAGGAT CTCGATAACC ATCGGATCAT CAGCTTTGGC
GAACCAGCGC CCAATTACCT GCTTGACGTT AACTGGCTGG AAGTGGCCGG GCGCTCCTCC
GACAATCGCC GGATTCCCCA TCTGCAAATC AACAGCCAAA CCTCGATCAA GCGCGCCTGC
CTGCTGGGCA TAGGGGTCGC CTGCATGCCC GATTACATTG TCGGACGCGA TCCGGGGCTA
ATTCAGTTGC CGATCAATGC CGAAGTTCCG TCCTTTGATA CCTATTTCTG CTATCCGGAC
GAGATGAAAA ATGCGGCCAA GCTAAAAGTT TTCCGCGACT TCATCGTCAG CAAGGCGCGC
AACTGGAATT TCTGA
|
|---|
| Protein sequence | MRGSSNIPLD WDKLRIFHAA AEAGSFTHAA DKLHLSQSAI SRQVSALEQD VGVKLFHRHA
RGLILTEQGE LLYRTAHDVL LKLETVKMQL TETTEKPSGK LRVTTTVGLG QGWLTDKVQE
FLQLYPDMSI QLILDNEELD VNMRHADCAI RLRQPQQSDL IQRKLFTVHM HVYAAPSYIN
RYGEPQTIED LDNHRIISFG EPAPNYLLDV NWLEVAGRSS DNRRIPHLQI NSQTSIKRAC
LLGIGVACMP DYIVGRDPGL IQLPINAEVP SFDTYFCYPD EMKNAAKLKV FRDFIVSKAR
NWNF
|
|---|
| |