| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3104 |
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| Symbol | rpoD |
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| ID | 7388651 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2577925 |
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| End bp | 2579970 |
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| Gene Length | 2046 bp |
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| Protein Length | 681 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643652055 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_002550239 |
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| Protein GI | 222149282 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.218533 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAACCA AGGTCAAGGA AAACGAAGAA GCCGAGAACG AGCGCGATGG CGCGACCGAC
GGTCCGCTTC TCGATCTTTC GGATGACGCG GTCAAGAAAA TGATCAAGGC CGCCAAGAAG
CGCGGCTACG TCACTATGGA TGAGTTGAAT TCGGTTCTGC CGTCTGAGGA AGTGACCTCG
GAGCAGATCG AAGACACCAT GGCGATGCTT TCCGACATGG GCATCAACGT CGTCGAGGAC
GAGGACGCCG AAGATCCGGC AGCCGAAGAA AGCGACAACG ACGAAGAAGC CGAAAGCGAA
GGCGGCGAAC TGGCGCCTGC TGGCAATACC GCTGTTGCCA CAGCCAAGAA GAAAGAGCCG
ACCGACCGCA CGGACGACCC GGTGCGCATG TATCTGCGCG AAATGGGCTC GGTGGAGCTG
TTGTCGCGCG AAGGCGAAAT CGCCATTGCC AAGCGCATCG AGGCTGGCCG CGAAACGATG
ATCGCCGGTC TCTGTGAGAG CCCGCTGACC TTCCAGGCGC TGATTATCTG GCGCGACGAG
TTGAACGAAG GCACGACGCT GCTGCGCGAG ATCATCGATC TCGAGACCAC CTATTCCGGT
CCCGAGGCCA AGGCCGCGCC TCAATTCCAG AGCCCGGAAA AAATCGAGGC GGATCGCAAG
GCTGCCGAGG AAAAGGAAAA GACCCGCCGG GTCCGCTCCA GCGAAGACGA CATCACCAAT
GTCGGCGGCG ACATGCAGAT GCCGGAAGAA GAGGAAGAGG ACGAAGACGA GTCCAATCTT
TCGCTGGCCG CCATGGAAGC CGAGTTGCGG CCCCAGGTCA TGGAAACCCT CGACCTGATC
GCCGATACCT ACAAAAAGCT GCGCAAGTTG CAGGACCAGC AGGTGGAAGC GCGCCTGGCC
TGTGCCGGCA CGCTGTCGTC AGGCCAGGAG CGGCGCTACA AGGAGCTGAA GGATCAGTTG
ATCACGGCAG TCAAATCGCT GTCGCTGAAC CAGAACCGGA TCGACAGCCT TGTCGAGCAG
CTCTACGACA TTTCCAAGCG CCTGATGCAG AACGAAGGCC GCCTGTTGCG GTTGGCTGAA
AGCTACGGCG TCAAGCGCGA CAGCTTCCTG GAGCAATATC AGGGCGCGGA ACTTGATCCC
AACTGGATGA AGTCGGTCGG CAATCTGGCT GCCCGAGGCT GGAAGGATTT CGCCCGCGAA
GAAAACAACA CGATCCGGGA AATCCGTCAG GAAATCCAGA ATCTGGCCAC AGAAACCGGC
ATTTCCATCG CTGAATTCCG CCGTATCGTC TCCATGGTAC AGAAGGGCGA ACGCGAAGCC
CGGATCGCCA AGAAGGAAAT GGTCGAGGCC AATCTGCGTC TGGTTATTTC GATTGCCAAA
AAATACACCA ATCGCGGCCT GCAATTCCTT GACCTGATTC AGGAAGGCAA TATCGGCCTG
ATGAAGGCGG TTGACAAGTT CGAATACCGG CGCGGCTATA AGTTCTCCAC CTATGCGACG
TGGTGGATCC GGCAGGCAAT CACCCGTTCG ATTGCCGACC AGGCCCGCAC GATCCGTATT
CCGGTGCATA TGATCGAAAC GATCAACAAG ATCGTTCGGA CCTCGCGCCA GATGCTGCAC
GAAATCGGCC GCGAACCGAC CCCGGAAGAA CTGGCTGAAA AGCTGGCCAT GCCGCTCGAA
AAAGTCCGCA AGGTGCTGAA AATCGCCAAG GAGCCGATCT CGCTCGAAAC CCCTGTGGGC
GACGAGGAAG ATTCGCATCT CGGCGACTTC ATCGAGGACA AGAACGCGCT ACTGCCCATC
GACGCCGCCA TCCAGGCCAA CCTGCGCGAA ACCACCACCC GTGTGTTGGC ATCGCTGACG
CCACGCGAAG AGCGCGTGTT GCGCATGCGC TTCGGCATCG GCATGAACAC CGACCACACG
CTGGAAGAAG TCGGCCAACA GTTCTCGGTT ACCCGCGAAC GTATCCGCCA GATCGAAGCC
AAGGCACTTC GCAAGCTCAA GCATCCGAGC CGCTCGCGCA AACTGCGCAG CTTCCTGGAT
AGCTAA
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| Protein sequence | MATKVKENEE AENERDGATD GPLLDLSDDA VKKMIKAAKK RGYVTMDELN SVLPSEEVTS
EQIEDTMAML SDMGINVVED EDAEDPAAEE SDNDEEAESE GGELAPAGNT AVATAKKKEP
TDRTDDPVRM YLREMGSVEL LSREGEIAIA KRIEAGRETM IAGLCESPLT FQALIIWRDE
LNEGTTLLRE IIDLETTYSG PEAKAAPQFQ SPEKIEADRK AAEEKEKTRR VRSSEDDITN
VGGDMQMPEE EEEDEDESNL SLAAMEAELR PQVMETLDLI ADTYKKLRKL QDQQVEARLA
CAGTLSSGQE RRYKELKDQL ITAVKSLSLN QNRIDSLVEQ LYDISKRLMQ NEGRLLRLAE
SYGVKRDSFL EQYQGAELDP NWMKSVGNLA ARGWKDFARE ENNTIREIRQ EIQNLATETG
ISIAEFRRIV SMVQKGEREA RIAKKEMVEA NLRLVISIAK KYTNRGLQFL DLIQEGNIGL
MKAVDKFEYR RGYKFSTYAT WWIRQAITRS IADQARTIRI PVHMIETINK IVRTSRQMLH
EIGREPTPEE LAEKLAMPLE KVRKVLKIAK EPISLETPVG DEEDSHLGDF IEDKNALLPI
DAAIQANLRE TTTRVLASLT PREERVLRMR FGIGMNTDHT LEEVGQQFSV TRERIRQIEA
KALRKLKHPS RSRKLRSFLD S
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