Gene Avi_3100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_3100 
SymbollysE 
ID7388647 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp2573817 
End bp2574422 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content61% 
IMG OID643652051 
ProductLysE family transporter 
Protein accessionYP_002550235 
Protein GI222149278 
COG category[R] General function prediction only 
COG ID[COG1279] Lysine efflux permease 
TIGRFAM ID[TIGR00948] L-lysine exporter 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.0629336 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAACG CCTATTTTTC CGGCCTGTTT CTTGGCCTGA GCCTGATTGT CGCCATTGGT 
GCGCAAAACG CCTTCCTGCT GCGCCAGGGC TTGCGGCGCG AGCATGTCTT TATCCTCTGC 
CTGACCTGCG CCGCCTCTGA TGCCTTGCTG ATCGTGCTTG GCATTTCCGC GCTGGCGACA 
GTAACCGCAC TTCTGCCCGC TTTTGAGCCG GTGCTGCGCT ATGGTGGCGC GGCGTTTCTT 
CTGGCCTATA GCGCCCGGCA TGCCTTCGCT GCGCTGAAAA CCGAAAGCGG CCTTGCGCCC 
GGCGAGGCAA AGCCCAGCAC GCTCACCGCC AGCCTTGCCA CCTGCCTCGC CCTTACCTTT 
CTCAACCCGC ATGTCTATCT GGATACGGTG CTGCTGATCG GCTCTATTTC CAGCCGCTTT 
GCGGATCACA AGACAGCCTT CGGCCTTGGC GCGGTTTCGG CTTCCTTCCT GTTTTTCTTC 
TCGCTCGGCT TTGGCGCACG GCTATTGGTG CCGGTATTTG CGCGGCCCGT CTCCTGGCGC 
ATTCTGGATG CAATCATCGC CGTGGTCATG GCCTGGATCG CCATCGGGCT GATCCGGCAT 
TCGTAA
 
Protein sequence
MQNAYFSGLF LGLSLIVAIG AQNAFLLRQG LRREHVFILC LTCAASDALL IVLGISALAT 
VTALLPAFEP VLRYGGAAFL LAYSARHAFA ALKTESGLAP GEAKPSTLTA SLATCLALTF 
LNPHVYLDTV LLIGSISSRF ADHKTAFGLG AVSASFLFFF SLGFGARLLV PVFARPVSWR 
ILDAIIAVVM AWIAIGLIRH S