| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_3088 |
|---|
| Symbol | glf |
|---|
| ID | 7388638 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 2562124 |
|---|
| End bp | 2563227 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643652042 |
|---|
| Product | UDP-galactopyranose mutase |
|---|
| Protein accession | YP_002550226 |
|---|
| Protein GI | 222149269 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0562] UDP-galactopyranose mutase |
|---|
| TIGRFAM ID | [TIGR00031] UDP-galactopyranose mutase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.552299 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGAAA TTGCAATTGT CGGCGCAGGA CTTTCAGGAG CGGTCATCGC TCGCGAACTC
GCCGCAGCGG GGCACAAGGT CTCCGTATTC GAGGCGCGCG ACCATATCGC CGGCAATTGC
CACACGGCGC GCGACCCTGA AACAGGTGTC ATGGTGCATG TCTACGGGCC GCATATTTTT
CACACCGATA ATGAGACTGT CTGGAACTAC ATTACGGGAT TCGATACTTT CCAACCCTAT
ACCAACCGGG TGAAGGCCAT AACCGAAGGT CGGGTCTTTT CTCTGCCGAT CAACCTTCAT
ACGATCAACC AGTATTTCGG TAAGACCTTC AACCCGACTG AGGCCCGCGC CTTTATCGAA
TCGAAGGGCC TGAAAATGGA TCAGGAGCCG CAATCCTTTG AAGAGCAGGC GCTGAAATTT
ATCGGCAAGG AGCTCTATGA AGCATTCTTC AAGGGTTACA CGATCAAGCA GTGGGGTGTG
CAACCGGACC AGTTGCCGGC CAGTATTTTG AAACGGCTTC CAGTCCGGTT CAATTACGAT
GATAACTACT TCAATCATCG TTTCCAGGGC ATGCCAAAGC ATGGTTATAC ACAGATCGTC
GAGCGGATAC TGGATATCGA TGGCGTTGAA GTTCACCTGA ACAGGCCCTT TTCTCCGGCA
GAAAAGGATG ATTTCGACCA TGTTTTCTAT AGTGGTCCGC TGGATGCCTG GTTCGACTAT
CGCGAAGGCA GGCTTCCTTA TCGCACGCTG GACTTCGAAA TCCTGCGGGG GGAGGGCGAT
TTTCAGGGAA ATGCAGTGGT CAATTATTGC GGCTCTGACG TGCCTTATAC CCGGATTACT
GAACATAAGC ATTTCTCGCC CTGGGAAACG CATGAGAAAA CCATCTGCTA CAAGGAATAT
AGCCGCTCCT GCACGGAGAA GGACATTCCC TATTACCCGG TACACCTCAC CGGTCTGTCG
GATAACCTCA CCCGTTACCA GGAACTGGCT GCAGCTGAGA AAAATGTAAC CTTCGTCGGC
CGGCTCGGCA CTTTCCGATA TCTCGACATG GATGTCTCCA TCGCCGAAGC GCTTGATTGC
GCAAAGAAAT TTGTGTCTGG TTGA
|
|---|
| Protein sequence | MKEIAIVGAG LSGAVIAREL AAAGHKVSVF EARDHIAGNC HTARDPETGV MVHVYGPHIF
HTDNETVWNY ITGFDTFQPY TNRVKAITEG RVFSLPINLH TINQYFGKTF NPTEARAFIE
SKGLKMDQEP QSFEEQALKF IGKELYEAFF KGYTIKQWGV QPDQLPASIL KRLPVRFNYD
DNYFNHRFQG MPKHGYTQIV ERILDIDGVE VHLNRPFSPA EKDDFDHVFY SGPLDAWFDY
REGRLPYRTL DFEILRGEGD FQGNAVVNYC GSDVPYTRIT EHKHFSPWET HEKTICYKEY
SRSCTEKDIP YYPVHLTGLS DNLTRYQELA AAEKNVTFVG RLGTFRYLDM DVSIAEALDC
AKKFVSG
|
|---|
| |