Gene Avi_3068 details

Gene Information

• Locus tag: Avi_3068
• ID: 7388625
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 2546728
• End bp: 2548794
• Gene Length: 2067 bp
• Protein Length: 688 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643652030
• Product: transposase protein
• Protein accession: YP_002550214
• Protein GI: 222149257

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.329621
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGGAGT GGTTTTCGCT AGCCGAGCTT GCGGAGCTGA AGCTGCCGGA TCTGCCGCAC 
AATGTTGCGA GCCTGCATCG GCTTGCCACC AGCCAATATT GGAGGGGCCA CGACGGCCTG 
GCGCGGCAGG TCGCAGGCGC AACCAAAAAG GTCTGGGAAT ATCATGTCTC CCTCCTGCCG 
CATGCTGCGC AGACACGGCT GACGATTGCT GAGGGATCGC AAACGCCCGA ACAATGGCAG 
GCGATCATGG CTCGTAAAAA CCGGATTTGG GCGCGGTTTG AACGGCTTTC AAACGAGCAT 
CGAGAGATCT GCAAAAACCG TCTGGATGTG CTTTGCCGGG TGGAAGCGCT GGCTGCCCAG 
CCGGGTGTGA CCCGAGGCGC CGCGATCACC ATTGCCACGG CCGATGCCGG TGTCCAGAAG 
TCAGCCTATT ATGCCTGGAA GGCGCTCACC AAGGATCTGA GCCGCGAAGA CTGGTTGGCG 
GCTTTGGCTC CGTCTCTTTC GCCCAGCTTC GAGATCATGC CTGACATGGC TGACATCCAT 
CCTGAAGCCT GGGTGTTTCT GAAGTCCGAT TATCTGCGGC CTGAAAAGCC TGCTTTTGCC 
GCCTGCTATC GCCGGATGAT GAAGGTCGCC AAGCGCGAAC ATTGGTCACC TATCCCGTCC 
GAGCGGTCGC TGCGCCGCCG TTTCGACCGC GAAGTCGGCA AGGCCGTGAC GCTGATGAAG 
CGCGAGGGCA GGGACAAGGC GAAGGCACTC TATCCGGCCC AGCGCCGCAG CCGCGCGCAT 
CTACATGCGA TGCAGATGGT CAATATGGAT GGCCACAAGA TCGACGTGTT CGTTTCGGTT 
CCCTGGTCGA AAAAGCCGGT GCGCTTTTTC ATCATCGGCA TTCAGGATCT CTTCTCAGGC 
AAGATCGTTG CATGGCGGTT GTCGGAAGCC GAAACATGGG AAGCGGTGCG GCTGGTGATC 
GGCGACATGG TCGAGACCTT CGGTATCCCG GAAGACATCT ACATCGACAA TGGCAGGGCC 
TTTGCCAGCA AGTGGATCAC CGGTGGCACG GTCAATCGTT TCCGTTTCAA GGTGAAGCCG 
GAGGATCCGC GCGGTCTTTT GACCACGCTC GGCATCGAAG TTCACTGGAC GCGGCCATAT 
TCCGGCCAGT CCAAGCCGAT CGAGCGCGCC TGGCGCGATC TGGCGGAAAA CATCTCCAAG 
CATCCGTTTT GCGCCGGGGC ATATACCGGC AACAAGCCTG ATGCCAAGCC GGAAAACTAC 
ATGGAGCGGG CCATTCCGCT TGACGATTTT CGCGCGCACG TGGCGGCGCA GATTGTCGAG 
CATAATGCGC AGGAGGGACG CCGGGCCGAG AACTGCAAAG GCCGCAGTTT TGATGAGACC 
TTTGCCGCCT CCATGGCCGC GCCGACCACA ATTGTTCGGG TGCCATCCAA GGCGCAGTCC 
TCGCTTTGGA TGTTGGCATC TGAGGCGATC AGGACCCAGA AATCGAATGG CGGGGTTCAT 
TTCCAGGGGA ACCGCTATTT TGATCCAGCC CTGAACGAAT GGGCTGGAAA GCAGGTCATC 
ATCCGGTTTG ACCCCGATGC ACTTCATAAG CCGATCAGGG TTTATGACCT GAAGAACCGG 
TTGATCTGCG AAGCCGGCTG CATGGATGAT GCGGGCTTCA ACAGCAGGGA CGATGCGCGT 
GCGCATTCTC GTCTTGCCAA CACCCACAAG AAGGCGGTGC GCCTTAAGGC CGATGCGGAA 
GCAGCCCTCA GCGCCCAGCA GCTTGGCGAG ATCTATTACA AGGGATCCAA GCCCAAGCCA 
GTGGACACCC CAGAGCCGAT CCGGCCCGCC GTGACGCGGT TAATCACCCG CAGCCAGCAG 
GTGGAAGCGC CGGTCGAGGC GATTTCGGAT CAACATTTCG AAGACAGTTT TTCCCGCGCG 
CTGGGCCTGG TTCAGGGCGG TGGGGTCATT GAATTCCCGA GAGGGAATAG CCCGGTGTCG 
CGTGTTTCGG ATGCCGGGAA CAACGAGCCG AAGAGTAATG CGTACGGTTC CGGAAAAAAG 
AAGGGCAGTC CTAGGACTGC CCGATAA 

 

Protein sequence

MKEWFSLAEL AELKLPDLPH NVASLHRLAT SQYWRGHDGL ARQVAGATKK VWEYHVSLLP 
HAAQTRLTIA EGSQTPEQWQ AIMARKNRIW ARFERLSNEH REICKNRLDV LCRVEALAAQ 
PGVTRGAAIT IATADAGVQK SAYYAWKALT KDLSREDWLA ALAPSLSPSF EIMPDMADIH 
PEAWVFLKSD YLRPEKPAFA ACYRRMMKVA KREHWSPIPS ERSLRRRFDR EVGKAVTLMK 
REGRDKAKAL YPAQRRSRAH LHAMQMVNMD GHKIDVFVSV PWSKKPVRFF IIGIQDLFSG 
KIVAWRLSEA ETWEAVRLVI GDMVETFGIP EDIYIDNGRA FASKWITGGT VNRFRFKVKP 
EDPRGLLTTL GIEVHWTRPY SGQSKPIERA WRDLAENISK HPFCAGAYTG NKPDAKPENY 
MERAIPLDDF RAHVAAQIVE HNAQEGRRAE NCKGRSFDET FAASMAAPTT IVRVPSKAQS 
SLWMLASEAI RTQKSNGGVH FQGNRYFDPA LNEWAGKQVI IRFDPDALHK PIRVYDLKNR 
LICEAGCMDD AGFNSRDDAR AHSRLANTHK KAVRLKADAE AALSAQQLGE IYYKGSKPKP 
VDTPEPIRPA VTRLITRSQQ VEAPVEAISD QHFEDSFSRA LGLVQGGGVI EFPRGNSPVS 
RVSDAGNNEP KSNAYGSGKK KGSPRTAR