| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2923 |
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| Symbol | |
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| ID | 7386104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 2439678 |
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| End bp | 2440679 |
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| Gene Length | 1002 bp |
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| Protein Length | 333 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643651931 |
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| Product | transcriptional regulator AraC family |
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| Protein accession | YP_002550116 |
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| Protein GI | 222149159 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.283298 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGGAC TGATCCCGCC GCAGCGCCTT ATCGAAATGA TCGTCGTCGT GCCGCCACGC
CTGCTGCTGC TGGATCTGGC AGGGCCGATG GAAGTCCTGC GCAAGGCCAA TCTTGAGCAG
GACAGTGTGC GATTCACGGT TCGATATGTC GGTCCCTCCC CCCACGTCAC CAGCTCGGTC
GGCCTGGCGC TTGCCGGGAT CGAGCCGCTG CCGGATGCCG TAGCCGACGG CGCGATGATT
ATCGTCCTGG GCAATGCCGC ACAGCCGCTC GGTGCAGTCG ATGCGGAGCC GGAGCCGGAC
GATCTTCTCC ATGAGGCAGC TATCGTCGCC TGGTTGCGGT CTGCTGTCCG GCCAGGCGTA
AAGCTCGTCA CCATTTGCTC GGGCGCCTTG TTGGCGGCCC GCGCCGGACT ATTGGAAGGT
TATACCTGTA CCGCGCACCA CACCGAGATT GATGAGTTGC GGCAGTTGGC ACCCACAGCA
AAAGTGGCGG AAAATCGCCT CTATATCCAG GACCGGGACA GGTTGAGCAC GGCAGGCATC
ACCGCCGGTA TCGACATGAT GCTGGCCTTG GTAGCAGAAG AGGCAGGACA CACGATAGCA
CTCAACGTTG CCCGTTACCT GGTTGTTTAT CTGCGCCGGG CGGGGAACGA TCCGCAGCTC
TCCCCATGGC TTGAGGGGCG TAACCATATC CATCCTGTCA TTCACAAGGT CCAGGATGCG
GTTTCGGCTG ACCCTGCCGG CAACTGGACG GTTGCCAGCA TGGCAGCCAT TGCGGCCACC
AGCGCCCGTA GCCTCTCGCG CCTGTTTAAC GAGCAAACCG GCATGAGCGT AACCGATTAT
GTCAACCGCC TTCGGGTCGC CTTGGCCCAT CAGCTGGTCA CCGCTTCGCG GTTGGATATG
GAAACCGTTG CGCAACGCTC TGGTTTTGCA TCCACCCGAC ACATGCGCCG CGCCTGGAAA
AAGTTGCACG GCGGAACGCC AACAGCATCG CGCAGTCCCT GA
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| Protein sequence | MTGLIPPQRL IEMIVVVPPR LLLLDLAGPM EVLRKANLEQ DSVRFTVRYV GPSPHVTSSV
GLALAGIEPL PDAVADGAMI IVLGNAAQPL GAVDAEPEPD DLLHEAAIVA WLRSAVRPGV
KLVTICSGAL LAARAGLLEG YTCTAHHTEI DELRQLAPTA KVAENRLYIQ DRDRLSTAGI
TAGIDMMLAL VAEEAGHTIA LNVARYLVVY LRRAGNDPQL SPWLEGRNHI HPVIHKVQDA
VSADPAGNWT VASMAAIAAT SARSLSRLFN EQTGMSVTDY VNRLRVALAH QLVTASRLDM
ETVAQRSGFA STRHMRRAWK KLHGGTPTAS RSP
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