Gene Avi_2780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_2780 
Symbol 
ID7385919 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp2316480 
End bp2317118 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content62% 
IMG OID643651828 
Producttranscriptional regulator TetR family 
Protein accessionYP_002550013 
Protein GI222149056 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCGACCA ATGCCATGCC AACAGCAGAA TTTTCTGCAC GCCAGAGCGC GGTTCTGGCG 
GAGGCCTTGC GCCTTTTGGT CGAAGGCGGC GACAAGGCAT TGACCACGGC CGGTTTAGCG 
CGGGCGGCCA ATTGCTCCAA GGAAAGCCTT TATAAATGGT TCGGCGACCG CGACGGTCTG 
CTGTCTGCGA TGATTTCCTA TCAGGCCAGC AAGGTGCGCA CCTTCGAGCG CGCCGGCGAG 
CGCCTGACGC CGCAGATGCT GGCGGATCAT TTGCAGGTTT TCGCCCGCGA TTTGCTGGAT 
GTCCTGTCCG GCGAAATCTC GCTGGCGCTG AACCGTCTTG CCATTGGCCA GACCAGTCGC 
GACGGCTCGA AACTGGGGCA AATGCTGCTG GAGCGTGGCC GCCGCCAGAT CGACCGCCGG 
GCGAGGGCGC TGCTGGATGC CGGACGACGC GATGGCCTGT TGCGGTTCGA GGACGGCGAG 
GATGCCTATC GCACGCTTTA CGGCCTGATC GTTTCCGATC TTCATGTTCG CCTGCTGCTG 
GGTGAAAAAC CCGAGCCACG AAAATTCGAC GCCCGCGCAC ACAAGGCGGT GTCCGCCTTT 
CTTGTGTTGC ACGGCACGGA CAAGACATCG TCAGCGTAA
 
Protein sequence
MSTNAMPTAE FSARQSAVLA EALRLLVEGG DKALTTAGLA RAANCSKESL YKWFGDRDGL 
LSAMISYQAS KVRTFERAGE RLTPQMLADH LQVFARDLLD VLSGEISLAL NRLAIGQTSR 
DGSKLGQMLL ERGRRQIDRR ARALLDAGRR DGLLRFEDGE DAYRTLYGLI VSDLHVRLLL 
GEKPEPRKFD ARAHKAVSAF LVLHGTDKTS SA