| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2517 |
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| Symbol | omp1 |
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| ID | 7385881 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 2076159 |
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| End bp | 2078495 |
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| Gene Length | 2337 bp |
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| Protein Length | 778 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643651624 |
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| Product | group 1 outer membrane protein precursor |
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| Protein accession | YP_002549812 |
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| Protein GI | 222148855 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0358941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGCTG GTTCAAAATT TTTGAACGCG GTGTCAGCGA TTGCGCTGTC TGCTGGTGTA
GTTTCGTTAA GTGCAGGCCT CGCCGTTGTG GCATCTGCCT CTGTTGCCAA TGCGGCCTTG
ATCCAGCGGA TCGATGTGCG TGGTGCGACG CGTGTCGGGA CGGAGGCTGT TCGTTCCAAC
TTGACGATCC AGCCTGGAAA AGCCTTTTCC AATTCCGACA TCGACGACTC GGTAAAGCGT
CTTTACGCAA CGGGTTATTT TTCCGATGTG AAGATTTCGG TTTCCGGCAG CGCCCTGGTG
GTTACGGTCA ACGAGAACCA GTTGGTCAAC CAGGTCGTGT TCAACGGCAA CCGCAAGATC
AAAGATGACA AGCTTACGAC TGTTGTTCAG ACGCAGCCGC TTGGTCCTTA TAGCCAGGAA
CTCATCCAGG CCGATATAAA CCGCATCAAG CAGGCCTATG CCGCCATTGG CCGCAGTGAA
GTTGAAGTCA CGACGCAGAC CGCGCCGGTT GGCCCTGGTC GCGTCAATCT CGCTTTTGTC
ATCAATGAAG GTGATCGTAC CAAAATCGCT GCCATCAACT TCGTCGGCAA TCACGCCTAT
GGCGATAGCC GCCTTGCGGC CGTTATCAGC ACCAAGAAGT CCAATCCTTT GTCGTTCCTG
ACCCGTAAGG ATGTCTATAA CGACGACAAG TTGAAGGCTG ACGAGGAAGC TCTGCGTCAG
TTCTATTACA ATCATGGTTA TGCCGATTTC CGGATCACGT CTTCGGATGC ATCGCTGAAC
GAGCAGACCA ACGAATACAC CGTCAACATC ACGGTTGATG AAGGTCAGCG TTACAAGTTT
TCCGATATTA ATGTCGAAAG CTCTGTTGAA GGCGTGGACC CGACTGAGTT GAAGGGTCTG
GTGACAACGT CGCCGGGCGG CGTTTACAGC GCCCGCGAAA TCCAGAAATC GATGGAAGCG
ATCCAACAGC GCGTTTCCGC CAAGGGCTAT CCCTTTGCCC GCGTCGTTCC GCGCGGCAAC
CGCGATATGG GCAATGGCAC GATCGGTGTC ACCTATATGG TTGACCAGGG TGAGCGCGCC
TATGTCGAGC GTATCGAAGT CAAGGGCAAT ACAAGGACAC GCGATTACGT TATTCGTCGC
GAATTCGACA TCAGTGAAGG CGATGCTTTC AACCAGGAAG TCATTACCCG CGCCAAGCGT
CGTCTTGAAG CTTTGGGCTA CTTCAGCTCG GTCAATATCA CGACGGCTCA GGGCAGTGCT
CCAGACCGTG TCATCATTGT CGTCAATGTC GAAGATCAGT CGACTGGCTC CTTCGGTATT
GGCGCTGGCT ACTCCGTTGG TGGCGATGGC CTGATCCTGG AAGCTTCGGT GGAAGAAAAG
AACTTCCTCG GTCGCGGTCA GTATATCCGT ATTGCGGCTG GTGCCGGTAC GGATGACAGC
CAGACCTACA ATCTGTCATT CACCGAGCCC TACTTCCTCG GCTATCGCCT TGCTGTTGGT
TTCGACCTGT TCAAGAGCAG CACGAGCAGC AACGATTATT ATGATTACAA CGAACAGGGT
GGCACCCTGC GCGTCACGGC GCCGATTACT GAAGATCTGG CAACGACGTT CCGCTACACC
TACAAGCAGA TCAAGTACAA GGGCGTCGAC GACTGGACGA CATCCCTGTC GCAGCCTTAT
CAGGATCTAA TCAACGGCAG CCCATGGGTC GTGTCTTCGG TTTCGCAGAC TTTGACCTAT
AATACGCTGG ATGATAAAAA TCTGCCGCAT GAAGGCATCT ATGCGACATT CACCCACGAG
TTTGCCGGTC TCGGTGGCGA TTCCGAGTAC TACAAGCTCT ACGGTAAGGC CCGTATCTTC
AAGAGCCTGT CGGATGAGCA GGATATTATC GGATCGCTGT CTTTCGGCGC CGGTCATGTC
ATGGCTACAG GTGATAACCT GAACGTCTTC GACCAGTTCC AGATCGGCGG TAAGGAAATC
CGCGGCTTTG AGAACAACGG TATTGGTGTT CGTATGCCGA ACCGCAACGA CGACTCCTTG
GGTGGCACCA CCTATTTCAC CGCCTCTGCT GAAGCGAGCA TGCCCATTCC GGGCGTTCCG
CAGGATGCAG GCTTCCGTAT CGCTGTCTTC TCTGATGCCG GTACGCTTTA CGGCAATGAC
GTGAAGAACA GCGGTGGAGC ACAGGGCGAA GACATGGCAT GGCGTGCATC TGTTGGTGCC
GGCATCGTCT GGGCATCTCC TTTCGGTCCG CTGCGCTTCG ATTACGCACA GCCTATCCTC
AAGGAAGATT ACGACAAGGT GCAGCAGTTC CGATTCTCCA TTGCGAACCA GTTCTGA
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| Protein sequence | MKAGSKFLNA VSAIALSAGV VSLSAGLAVV ASASVANAAL IQRIDVRGAT RVGTEAVRSN
LTIQPGKAFS NSDIDDSVKR LYATGYFSDV KISVSGSALV VTVNENQLVN QVVFNGNRKI
KDDKLTTVVQ TQPLGPYSQE LIQADINRIK QAYAAIGRSE VEVTTQTAPV GPGRVNLAFV
INEGDRTKIA AINFVGNHAY GDSRLAAVIS TKKSNPLSFL TRKDVYNDDK LKADEEALRQ
FYYNHGYADF RITSSDASLN EQTNEYTVNI TVDEGQRYKF SDINVESSVE GVDPTELKGL
VTTSPGGVYS AREIQKSMEA IQQRVSAKGY PFARVVPRGN RDMGNGTIGV TYMVDQGERA
YVERIEVKGN TRTRDYVIRR EFDISEGDAF NQEVITRAKR RLEALGYFSS VNITTAQGSA
PDRVIIVVNV EDQSTGSFGI GAGYSVGGDG LILEASVEEK NFLGRGQYIR IAAGAGTDDS
QTYNLSFTEP YFLGYRLAVG FDLFKSSTSS NDYYDYNEQG GTLRVTAPIT EDLATTFRYT
YKQIKYKGVD DWTTSLSQPY QDLINGSPWV VSSVSQTLTY NTLDDKNLPH EGIYATFTHE
FAGLGGDSEY YKLYGKARIF KSLSDEQDII GSLSFGAGHV MATGDNLNVF DQFQIGGKEI
RGFENNGIGV RMPNRNDDSL GGTTYFTASA EASMPIPGVP QDAGFRIAVF SDAGTLYGND
VKNSGGAQGE DMAWRASVGA GIVWASPFGP LRFDYAQPIL KEDYDKVQQF RFSIANQF
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