| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2334 |
|---|
| Symbol | |
|---|
| ID | 7386401 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1912417 |
|---|
| End bp | 1913679 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643651483 |
|---|
| Product | phage tail sheath protein |
|---|
| Protein accession | YP_002549672 |
|---|
| Protein GI | 222148715 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3497] Phage tail sheath protein FI |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACC CGACATTTGG CATTACCATC AACCGAAGCG CCAACGAGGC GACGACGGCC
TCGAAAGCGC AGATGAGCGT CGTTGGCATT TGCATGCCGA TCGATAAGGC CGCCAGCGCG
GATCAGACGG CGTTCAACAC GGCGTTTCCG CTGAACACCT GCGTCAAGCT GAACAGCAAT
GACACCAGCA TTCTGGCGCT CTGCGATCAG GATGGCGGCT TCATTGATGC GATTGAAGGC
ATCAACGATC AGCTTGGCAG CTACCAGACG GCGGCGACCC TGGTGGTTGT TCGTGTTGCC
GAGGGTGTCG ATGATGCAGC GACCATGGCC AACATCACCG GCACCTCGGT GGCAGGCACG
GGCATCTTCG CATTTCTCGA TGCCGGTCCG GATGTCGGCG TCTATCCCCG CCTGTTGATC
TGCCCGGGCT TTACCAAAAC CCACGCCGAT GGCGCCGCCA ACCCGGTGCT GGCTTCGTTG
CCGACCGTGG CCAACCAGAT CCTGGCGCAG GTGATTGCTG ATGGGCCGGC CGGGCTGGAC
GATTTCACCG ATTGGGTTGA GCAGCATGCA GGCATGCGGA TCATTCCGGT TTCCGGTGGC
GTCTATGCCA CTGATAGCAC CGGCGCGGAC GTGTTGCGGC CGATGAGCCC GCGCGTGGCC
GGTCTCTTCG TGCGGAGGGA TTACGAGAAC GACGGCTCGC CGTTCAAGTC CATTGCCAAC
CAGACGGTCT ACGGCATTAC CGGCGTCGAG AAGAACCTGC GGTTTTCGCT GACGGACGGC
TCGACCGAGG GACAGCAGAT CCTGGCGGTG CACGGCGGGA TCATCGTGCG GGGCGAGAGC
GGCGACGATT TCTCGATTTC CGATGGCGGC TATGTTTTCA TCGGCACGGA CAACCTGTCC
GAGGAAAGCG TCTGGGACCA GTATCACAAG GTCCGTGGCC GCGACTTTGT CGAGCTGACC
GTGCTGCGTA CCGTGCGCTC CTACCTCGGC AAGTACAATC TGACGACACA GACCATCCAG
TCTGTCGTCA ACACCATTTC GACCATCCTT CAGAACCGGC AGTCAAATGG CGATATCCTC
GGGTTTCGTG CGCGGTTCGA CCCGGACAAG AACAATGCCA GCGACCTGCG CGCCGGGCAT
ATCTACGTGG ATATGCAGTT TGAGGAAGCC CCGGTCTTCA AGCGTCTGAC CGTGGCCTCC
CGGCCTTACG CGGCGGCGCT GGATGCCACC ATCGATGAAA TCTTGGCGGC ACAGAACGCC
TGA
|
|---|
| Protein sequence | MTDPTFGITI NRSANEATTA SKAQMSVVGI CMPIDKAASA DQTAFNTAFP LNTCVKLNSN
DTSILALCDQ DGGFIDAIEG INDQLGSYQT AATLVVVRVA EGVDDAATMA NITGTSVAGT
GIFAFLDAGP DVGVYPRLLI CPGFTKTHAD GAANPVLASL PTVANQILAQ VIADGPAGLD
DFTDWVEQHA GMRIIPVSGG VYATDSTGAD VLRPMSPRVA GLFVRRDYEN DGSPFKSIAN
QTVYGITGVE KNLRFSLTDG STEGQQILAV HGGIIVRGES GDDFSISDGG YVFIGTDNLS
EESVWDQYHK VRGRDFVELT VLRTVRSYLG KYNLTTQTIQ SVVNTISTIL QNRQSNGDIL
GFRARFDPDK NNASDLRAGH IYVDMQFEEA PVFKRLTVAS RPYAAALDAT IDEILAAQNA
|
|---|
| |