| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2280 |
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| Symbol | recJ |
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| ID | 7386369 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1872961 |
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| End bp | 1874763 |
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| Gene Length | 1803 bp |
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| Protein Length | 600 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643651446 |
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| Product | single-stranded-DNA-specific exonuclease |
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| Protein accession | YP_002549640 |
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| Protein GI | 222148683 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
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| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.340529 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTGAAC CCGCCGACCC GATCGAACGC GCCTTTTTGA ATGTCGAGAC CTCGGTCAGC
GGTCAGCGCT GGGTGTCTCG GCTGGATCAG GCTGGGTTGA ACCGATCACT GGCGATTGCG
CAGGTGCATG GCATTCCCGA TCTGGTGGCG CGTGTTCTGG CCGGGCGGGG CGTGGCGGTT
GCCGATGCGC AAGCCTTTCT CGATCCGACC ATCCGCGACC TGATGCCCGA CCCTTCCAGC
CTGACCGATG GTGACAAGGC CGCGGACCGG CTGGTGGCGG CAATCATGCG CTCTGAGCGC
GTGGCGATTT TTGGCGATTA TGATGTCGAT GGGGCTGCGT CGTCGGCGCT GTTGTGGCGG
TTTCTCGCGC ATTTCGGTAT TGAGGCCGAA ATCTATATTC CCGACCGAAT TTTCGAAGGT
TATGGCCCGA ATGCCGTTGC CATCGGCCAA TTGATCGAGC GCGGCGCGCA ATTGATCGTC
ACGGTGGATT GCGGCTCGAC CAGCCATGAG GCCCTTGAGG AGGCCAGACG CAGAGGCGTT
GATGTGGTGG TGATCGACCA TCACCAGATG GGCCAGGATT TGCCCGCCTG TCTGGCATTG
GTCAATCCCA ACAGGAGCGA CGATCTGTCA GGACAGGGCC ATCTCTGCGC AGCGGGCGTG
GTGTTCATGG TGCTGGTGGG AACGCTGCGC AAGCTGCGTG AGGCTGGTCA CGGTGCTGCA
CGCTCGCTCG ATCTGCTGGC CTGGCTTGAT CTGGTGGCGC TGGCGACGGT CTGCGATGTC
GTGCCGTTGA AAGGGTTGAA CCGCGCCTAT GTGGTGAAAG GCTTGATTGC CGCCCGTCAC
CAGCAGAATG CCGGTCTTGC AGCCCTTCTG AAGATCGCCG GGATTGGCGG TCCGGTGACG
CCCTATCATT TCGGTTTTCT GGTTGGGCCA CGAATCAATG CCGGTGGCCG GATCGGCGAT
GCGGCGCTGG GCAGCCGGTT GCTGACGCTG GACGACGCTG CCGAGGCCGA TGAAATCGCC
GCCCAACTGG ATGATCTGAA CCGCCAACGT CAGGCGATGG AAGCGCAGAT GCTGGCCGAG
GCCGAAGCCG AGGCCATGGC GGAATATGGC ACCGGCGAGA ATGCCGCTGT GATTCTCACA
GCCCGGGAAG GCTGGCATCC CGGCATTGTC GGGCTGCTGG CGGCCCGTCT TAAAGAGCGG
TTCCAACGGC CTGCCTTTGC CATTGCCTTC GATGGATCAG GCAAGGGGAC AGGCTCCGGC
CGGTCCATTG CCGGTTTCGA CATGGGAAAG ATGGTGCGTG CGGCGGTGGA CAATGGCCTG
CTGGTCAAGG GCGGCGGCCA CGCGATGGCC GCAGGGCTGA CGGTAGAGCG TGGCAATCTC
GGCAAGTTGC GGGCGTTTTT TGATGAACAG GCGCAGGAAA AGGTCATGGC GCTTTCCGCC
ATCAGGGCCT TGAAGATCGA TGGTGCGGTT GGCGCATCCG GTGCGACGCT TGCGTTGATC
GACCTCCTGG AAACCGCCGG ACCCTATGGT TCCGGCCATT CTCAGCCGAT CTTCGCCATC
CCGGCCCACC GCATTCGCGA TTCTCGGCTG ATTGGCACCA GCCACGTTAA GGTCACGCTG
GAAGCGCCAG ATGGCAGCCG AATCGACGGC ATTGCCTTTC GCGCCAAGGA AACACCGCTC
GGCGATCTTC TGCTCGGACG CCGAGGCGAC GCCGTGCATG TCGCCGGCTG CCTTGGGGCA
GAACTCTGGC AAGGCACGCG TCGTATCCAG ATCCGTATTC TGGATGCAGC GCCAGCGTTT
TGA
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| Protein sequence | MLEPADPIER AFLNVETSVS GQRWVSRLDQ AGLNRSLAIA QVHGIPDLVA RVLAGRGVAV
ADAQAFLDPT IRDLMPDPSS LTDGDKAADR LVAAIMRSER VAIFGDYDVD GAASSALLWR
FLAHFGIEAE IYIPDRIFEG YGPNAVAIGQ LIERGAQLIV TVDCGSTSHE ALEEARRRGV
DVVVIDHHQM GQDLPACLAL VNPNRSDDLS GQGHLCAAGV VFMVLVGTLR KLREAGHGAA
RSLDLLAWLD LVALATVCDV VPLKGLNRAY VVKGLIAARH QQNAGLAALL KIAGIGGPVT
PYHFGFLVGP RINAGGRIGD AALGSRLLTL DDAAEADEIA AQLDDLNRQR QAMEAQMLAE
AEAEAMAEYG TGENAAVILT AREGWHPGIV GLLAARLKER FQRPAFAIAF DGSGKGTGSG
RSIAGFDMGK MVRAAVDNGL LVKGGGHAMA AGLTVERGNL GKLRAFFDEQ AQEKVMALSA
IRALKIDGAV GASGATLALI DLLETAGPYG SGHSQPIFAI PAHRIRDSRL IGTSHVKVTL
EAPDGSRIDG IAFRAKETPL GDLLLGRRGD AVHVAGCLGA ELWQGTRRIQ IRILDAAPAF
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