| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2208 |
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| Symbol | nifU |
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| ID | 7387913 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1814105 |
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| End bp | 1814548 |
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| Gene Length | 444 bp |
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| Protein Length | 147 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651394 |
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| Product | NIFU-like protein |
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| Protein accession | YP_002549588 |
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| Protein GI | 222148631 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0822] NifU homolog involved in Fe-S cluster formation |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.329254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATGATA TTTACAATAC CAAAATCCTG GAATTTGCCG GCAATATCGT CCGCGTCGGC
GCATTGAGCA ATGCCGATGC CGTGGCTGAA AAGCACTCCC GCTTGTGTGG TTCCCGTCTC
AAGGCTTTTG TAACCGTGGA CGGTGAAAAA GTCACTGATT TTTCGCAGGA GTTGCGTGCC
TGCGCGCTGG GTCAGGCCTC CGCATCGATC ATGGCGCGCC ATGTGGTGGG CGCCAGCTTT
ACGGAGATTC GCAAGGCCCG GGCCGATATG CTGGCCATGT TGAAAGACGG TGGTGAGGGG
CCGCAGGGCC GGTTCGAGGA TCTGCGCTAC TTGATGCCCG TCAAGGATTA CAAGGCCCGC
CATGCCTCGA CCATGCTGAT TCTGGAGGCT CTGTGCGACT GCCTCGACCA GGTCGAGGCC
CGCCAATCGG CGCTGGCTGG CTAG
|
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| Protein sequence | MDDIYNTKIL EFAGNIVRVG ALSNADAVAE KHSRLCGSRL KAFVTVDGEK VTDFSQELRA
CALGQASASI MARHVVGASF TEIRKARADM LAMLKDGGEG PQGRFEDLRY LMPVKDYKAR
HASTMLILEA LCDCLDQVEA RQSALAG
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