Gene Avi_2156 details

Gene Information

• Locus tag: Avi_2156
• Symbol: holB
• ID: 7387872
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1769034
• End bp: 1770074
• Gene Length: 1041 bp
• Protein Length: 346 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651352
• Product: DNA polymerase III subunit delta'
• Protein accession: YP_002549547
• Protein GI: 222148590
• COG category: [L] Replication, recombination and repair
• COG ID: [COG2812] DNA polymerase III, gamma/tau subunits
• TIGRFAM ID: [TIGR00678] DNA polymerase III, delta' subunit

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 0.321574
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGGAAG GCGCTAGAAT GGAAAAGCCC GGTCTTCTCG ATGGTGCCAT TGCGCCTTTT 
GCCAATGACA GGATGTTTGG CCATGGCGCT GCGGAACAGT TTTTGGCCAG TTCCTACCAA 
TCCGGCAAGC TTCATCATGC GATCTTGATA GAAGGGCCGG AGGGGATCGG CAAGGCAACG 
CTGGCCTTCC GTTTCGCTCA TCATGTTCTA TCGCATCCCG ACCCCGCCAG TGCGCCCTTT 
GTCATCGCCG ACCCGGACCC CAATTCGCTG GTTGGGCGGC AGATTGCGTC CGGGGCCTCG 
CATAACCTCC TGCATATTGC CCGACCGGTG GATGAAAAGA CCGGCAGGGT AAAATCCTCG 
ATTACCGTGG AGGAAATCCG CAAGGCTGGT CATTTCTTTT CCCAGACCTC AGGTGGTGGC 
AATTGGCGGA TCGTCATCCT CGATCCTGCC GACGACATGA ACCGCAATGC GGCCAATGCC 
ATTTTGAAAG TGCTGGAAGA GCCGCCGAAA CGGTCGCTGT TTCTGGTCCT GTCCCATGCG 
CCCGGCAAGC TTTTGCCCAC CATTCGCTCA CGCTGCATGC CGCTGAAATT ACAAACGCTT 
GGCGTGGACG ATCTGGCCAG CGCGCTGGCG CATCTGGGGG TCTCGCCACC TGTGGAGCAG 
ATGGCGGCGC TTTCTGATCT CTCCAAGGGC AGCGTGTCGC AGGCGTTGAA ACTGATCAAC 
TATGGCGGCA TGGAAATCAT TGCTGCCTTC AATGCTATCC TTGCCAGTGA AGGCCCGGCG 
GCGCGAAAGC AGATGCACAA GCTGGCTGAT GCGCTGTCAG CCAAGGACAG CGACGTTATC 
TACCACTTCT TTATCGAGCA CCTGTCCGAA TTCCTGATGG ACAATGCGCG GCAGGTGGCG 
ATGGCGGGTG ATCTTGCCCG GGCCGAGCGG CTATCGCGGC TTTCCAGCGC CATCATTGAA 
AAGCTTGGTG TGGCCGGGGC CTATAACCTC GACCGTAAGC AGACGCTGCT GGAAATTCTT 
GGCGAGGTCG CGGCTGTATA A 

 

Protein sequence

MSEGARMEKP GLLDGAIAPF ANDRMFGHGA AEQFLASSYQ SGKLHHAILI EGPEGIGKAT 
LAFRFAHHVL SHPDPASAPF VIADPDPNSL VGRQIASGAS HNLLHIARPV DEKTGRVKSS 
ITVEEIRKAG HFFSQTSGGG NWRIVILDPA DDMNRNAANA ILKVLEEPPK RSLFLVLSHA 
PGKLLPTIRS RCMPLKLQTL GVDDLASALA HLGVSPPVEQ MAALSDLSKG SVSQALKLIN 
YGGMEIIAAF NAILASEGPA ARKQMHKLAD ALSAKDSDVI YHFFIEHLSE FLMDNARQVA 
MAGDLARAER LSRLSSAIIE KLGVAGAYNL DRKQTLLEIL GEVAAV