Gene Avi_2155 details

Gene Information

• Locus tag: Avi_2155
• Symbol: tmk
• ID: 7387871
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1768385
• End bp: 1769050
• Gene Length: 666 bp
• Protein Length: 221 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643651351
• Product: thymidylate kinase
• Protein accession: YP_002549546
• Protein GI: 222148589
• COG category: [F] Nucleotide transport and metabolism
• COG ID: [COG0125] Thymidylate kinase
• TIGRFAM ID: [TIGR00041] thymidylate kinase

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.367243
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCGGTTG GCAGCGGATT ATTTGTAACA TTCGAAGGCG GCGAGGGGGC GGGCAAGTCC 
ACCCAGATCA GGCTTTTGGC GAATGCGCTG GAGGCGCTCG GCTTTGCCGT TGTCACCAGC 
CGTGAACCTG GTGGCTCACC CTGCGCCGAG GCCTTGCGAC ATGTGCTGCT GTCGGGTGCC 
GCCGAGCCGT TCGGGGTGGA AATGGAAGCC ATCCTGTTTG CCGCCGCCCG CAATGACCAT 
GTCGAGGCGC GTTTGCGCCC AGCGCTACTG CGGGGCGATA TGGTCCTTTG TGACCGGTTC 
ATGGATTCCT CACGGGTCTA TCAGGGCGCG ACCGGCAATC TCTCTTCAGC CTTCATCGAG 
CGACTGCAAG CCATTGCCGT TGATGGCGTG GTGCCGGACC TGACGATCAT CCTCGATCTG 
CCAGCCAATA TTGGACTGGC GCGGGCCAAA AACCGGGCCG GGGCTTTGGG AGAAGATGCG 
CCGGACCGTT TCGAGAAAGA GGAAATCGCC ATTCACGAAC GCCGCCGCGA GGCTTTTCTG 
GCCATTGCGC GGGCCGAGCC TGCGCGTTGC AGAGTGGTGG ATGCGCGCGC CGGGATCGAG 
CAGATCGCCG AGGAGATTTT TGCAGCGGTG AAACCGCTCC TGCCTCACAA TGTCGGAAGG 
CGCTAG 

 

Protein sequence

MSVGSGLFVT FEGGEGAGKS TQIRLLANAL EALGFAVVTS REPGGSPCAE ALRHVLLSGA 
AEPFGVEMEA ILFAAARNDH VEARLRPALL RGDMVLCDRF MDSSRVYQGA TGNLSSAFIE 
RLQAIAVDGV VPDLTIILDL PANIGLARAK NRAGALGEDA PDRFEKEEIA IHERRREAFL 
AIARAEPARC RVVDARAGIE QIAEEIFAAV KPLLPHNVGR R