| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2132 |
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| Symbol | nifR |
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| ID | 7387853 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1747040 |
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| End bp | 1748038 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643651333 |
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| Product | nitrogen regulation protein |
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| Protein accession | YP_002549528 |
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| Protein GI | 222148571 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.296899 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGCAGCAAC CGGATCTCCA GACAGGGTTT AGTATTGCCT CGGTTGCCAT TCGCAACCGC
GTCGTGCTTG CGCCGATGTC CGGCGTCACT GACCTGCCGT TTCGGCAATT GGCCTTTCGC
CACGGGGCCG GGCTGGTGGT GACGGAAATG GTTGCCAGCC GCGAACTTGT GTTCAACGCG
GCGGAAAGCT GGTCGCGGCT GAAGGGTGCG GGCCTTACCC CACATATGGT GCAATTGGCC
GGGCGCGATC CGCATTGGAT GGCGGAAGCG GCGAAAATTG CCGAGGCCAA TGGTGCTGAT
ATTATCGACA TCAATATGGG GTGTCCCGCC AAGAAAGTCA TTGGTGGTTA TGCCGGATCG
GCGCTGATGC GCGAGCCGGA GATTGCGCTG GCGATGATCG AGGCGACAGT CAAGGCCGTT
TCCATACCCG TCACCGTCAA GATGCGGCTT GGCTGGGATT CCGATTCGAT CAACGCGCCG
GACCTGTCGC GCCGCGCGCA GGATGCCGGT GTGCAGGCAA TCACTGTACA TGGCCGCACC
CGCATGCAGT TCTACGAAGG CCGGGCCGAT TGGGATGCGA TTGCCGCTGT GCGTGATGCG
ATTTACATTC CGTTGATTGC CAATGGTGAT ATCGACACCC TTGGCGATGC GCAGGAAATC
CTGCGTAGGT CTGGTGCCGA TGCGATTATG CTGGGGCGCG CCTGCCAGGG GCGTCCCTGG
CATGCGGGTG TGCTGGCTGG CCACGCGCCG CCAAGCGCGG AGGAAATTCC AGCGATTGCC
GTCGCCCATT ACCGCGCCAT GCTGGATCAT TACGGCGCGC ATGTCGGCGT TCGCCATGCG
CGAAAGCATG TCGGCTGGTA TCTGGAGCGG CATGGGGTGC AGCTTGATCC TGCCGAAAAG
ACTGGGCTTA TGACATCGAA AGATCCCGAC CATGTCGCCG ACCGCCTGTT TGCGGCGCTG
GCTGGCGCGG CACCAAACCC GCTTGAGGAG GCCGCATGA
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| Protein sequence | MQQPDLQTGF SIASVAIRNR VVLAPMSGVT DLPFRQLAFR HGAGLVVTEM VASRELVFNA
AESWSRLKGA GLTPHMVQLA GRDPHWMAEA AKIAEANGAD IIDINMGCPA KKVIGGYAGS
ALMREPEIAL AMIEATVKAV SIPVTVKMRL GWDSDSINAP DLSRRAQDAG VQAITVHGRT
RMQFYEGRAD WDAIAAVRDA IYIPLIANGD IDTLGDAQEI LRRSGADAIM LGRACQGRPW
HAGVLAGHAP PSAEEIPAIA VAHYRAMLDH YGAHVGVRHA RKHVGWYLER HGVQLDPAEK
TGLMTSKDPD HVADRLFAAL AGAAPNPLEE AA
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