| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2075 |
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| Symbol | |
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| ID | 7386884 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1700760 |
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| End bp | 1701764 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643651293 |
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| Product | GGDEF protein |
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| Protein accession | YP_002549488 |
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| Protein GI | 222148531 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.605759 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTCTA TGGGCATTTC GCCGCTGCCA AGAAATTACG AGCTGTTCTA TGAGGCCTAT
ATCGGGTCCA ACCCGGTTCT GACCCGCAGG GTCACCGCTC TTGGAAGCCG TGCCACCCAG
GATGACCTCG ACCGGATTGC CGAGGAATTT TTCGGCCACA ATTCCAACCG CATCATCGAA
AATGCCCATT CAAGGCTGGT TTCGGAACTG GACAATCTGC TGCGGCTGAT GAAGCAGGAG
CAAAGTTCGC TCGAGACCTA TAACAAGTTG CTGGATGAAA CCTGTTCGCG CATCAACGCC
AAGAGCAGCG GCAGTGTCGA GTTGCTGCGC AATGCCATCG CACTCCTGAC GCGGGCAACA
GACGATACCC TGGCCCATGG CGAAAAGACT GCCGAGAGCT TTACCCAGAA ATCCGTTGAA
ATGGATGCCG TGCGGCGTGA ACTGGACGAA TACAAGCGAA TCGCCAACAC CGATTCGTTG
ACCCGGCTTG CCAATCGCCG CGCCTTTGAT GAACGCATGG CTGGCCTCTT CAACTATCCC
TCGACACTGA CAGCAACGTC GCTCATGCTG ATCGATATCG ACCATTTCAA GAAGATAAAC
GATACATTCG GCCATCCGGT CGGCGACAAG ATCCTGGCGA CCGTTGCGGG CGTCATCCGT
GCCAATGCAC CGCGTGATGC CTTCGTGGCA CGGGCGGGTG GTGAGGAATT CGCCATCATC
GTTGAGGGCA TGCCGGATAC CGAAGTGTTC GGGCTGTGTG AACGGATCCG CACCAATCTG
GAAAACACCC TGTTTCGCAA CTCCCGCACC GGCGTCAATT ACGGTCCGGT CACGGTCTCC
ATCGGCTTTG CCCTGGCCGC CAATTGCCAG GACCCCGGCG AACTTTATAG CCGCAGCGAT
ATCGCCCTGT ACTGCGCAAA GAATGCCGGG CGCAATTGCA GCAGGCCGTT TGAACCGGGC
ATGCGCAAGG ATTTCGCCAA GGGCTGGCTG ATCTACAAGG GGTGA
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| Protein sequence | MRSMGISPLP RNYELFYEAY IGSNPVLTRR VTALGSRATQ DDLDRIAEEF FGHNSNRIIE
NAHSRLVSEL DNLLRLMKQE QSSLETYNKL LDETCSRINA KSSGSVELLR NAIALLTRAT
DDTLAHGEKT AESFTQKSVE MDAVRRELDE YKRIANTDSL TRLANRRAFD ERMAGLFNYP
STLTATSLML IDIDHFKKIN DTFGHPVGDK ILATVAGVIR ANAPRDAFVA RAGGEEFAII
VEGMPDTEVF GLCERIRTNL ENTLFRNSRT GVNYGPVTVS IGFALAANCQ DPGELYSRSD
IALYCAKNAG RNCSRPFEPG MRKDFAKGWL IYKG
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