| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_2025 |
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| Symbol | def |
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| ID | 7386847 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1664245 |
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| End bp | 1664745 |
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| Gene Length | 501 bp |
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| Protein Length | 166 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643651255 |
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| Product | peptide deformylase |
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| Protein accession | YP_002549451 |
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| Protein GI | 222148494 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
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| TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCCTGA AAATCCTGCG CTACCCTCAT CCGCTTCTAG CGAAACCTTG CCAGACCGTG
ACGGCGTTTG ACGACAGGCT GATCAGTTTT GCCGATGCAT TATACAATGC AATGCGCGCC
GCACCCGGCG TCGGCATTAC CGCTGCGCAT GTGGGCGAGC TGATGCGCCT GGTCATCCTC
GATCTGCCCG AATTGGGTGG ACGGCGTGAT TACGTCAATC CTGAAATCCT CTCCTTTTCT
CAAAACACTC TGGATCATGA TGAAGGGAGT GTCTGCATGC CGGGCATGAC CGAGACCGTG
ACGCGGCCGC GCCAGATTAC CCTTCGCTAC CAGTCGCTGG ACGGTACGGT TCGCGAGGAG
GAGCTTCAGG ACTTTGCCGC CATCTGCATG CAGCATGAAA TCGACCAGCT CGACGGCCTG
TTCTGGATCC AGCGGCTTTC CCGCCTGAAA CGCGATCGGT TGCTGAAAAA ATGGCAAAAG
GCCGCATTGT CCCAACCATG A
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| Protein sequence | MALKILRYPH PLLAKPCQTV TAFDDRLISF ADALYNAMRA APGVGITAAH VGELMRLVIL
DLPELGGRRD YVNPEILSFS QNTLDHDEGS VCMPGMTETV TRPRQITLRY QSLDGTVREE
ELQDFAAICM QHEIDQLDGL FWIQRLSRLK RDRLLKKWQK AALSQP
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