Gene Avi_1964 details

Gene Information

• Locus tag: Avi_1964
• ID: 7387251
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1619678
• End bp: 1620334
• Gene Length: 657 bp
• Protein Length: 218 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 643651214
• Product: Transcription antiterminator protein
• Protein accession: YP_002549410
• Protein GI: 222148453
• COG category: [K] Transcription
• COG ID: [COG0250] Transcription antiterminator

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.940827
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGCAGC ATAACGGGAA ACTTCTGGAT GGCGTCTCGG ACGAGGGTCT TTCACGCTTG 
GCTTACGTCA ACGCCATGGA GGCCAAGCGG CAACGCCAAG TGGCGATGGC AAGGCGTGAC 
CGTCCCGAGT TCGACCGTTT GGCGCGCTGG GTGGTAGCCA GCTGCAAGAG CGGTATGGAA 
CAGGTGATCC GGGATTCGCT CGACCAGCAG GGAATCGAGT GCTGGTGCCC ATGCGAACGT 
CACAAGTGGC CGCCTCGGCG GGGTAAGCAA GCTGTGGAAA TCCAGCGGGC GCTGTTTCGG 
GGCTACCTGT TCGTGAAGGT CATTCCCGAC AATGAAGCCT TCGTCGGATT GATGCTTGCA 
TCCAAGCTTC GCGGGCTGAT GGGCAAGGAT GGCAAACCGC ACCTGATGCC CGAACCATTG 
ATGCGCCAAC TGATGCTCTC GGCCAAGAAA GCGGAAAGAA AACATATGGA TGTGGGCGAC 
GTGCCACCAA TGCCGGATGT GCTGGGCAAG CAGGTGACGA TCCGTTCCGG CCCGTTTGCC 
GACTTCGTGG TGACGGTGCG CAAGGTGCTG TCGAAGCGTG GCCAGGTGGT CGTTGATGTG 
CCGATGTTTG GCGGTATGAG CGAAATCACG ATGGGGATTG ACTTCATTTC TGACTGA 

 

Protein sequence

MMQHNGKLLD GVSDEGLSRL AYVNAMEAKR QRQVAMARRD RPEFDRLARW VVASCKSGME 
QVIRDSLDQQ GIECWCPCER HKWPPRRGKQ AVEIQRALFR GYLFVKVIPD NEAFVGLMLA 
SKLRGLMGKD GKPHLMPEPL MRQLMLSAKK AERKHMDVGD VPPMPDVLGK QVTIRSGPFA 
DFVVTVRKVL SKRGQVVVDV PMFGGMSEIT MGIDFISD