Gene Avi_1954 details

Gene Information

• Locus tag: Avi_1954
• ID: 7387246
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 1615576
• End bp: 1616190
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 643651209
• Product: Phage repressor protein
• Protein accession: YP_002549405
• Protein GI: 222148448
• COG category: [K] Transcription
• COG ID: [COG2932] Predicted transcriptional regulator

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTAATGG ATATTCTCAA CAGAATTCAG GAACGGCTCG ACACGGTTGG TTTGAGCGCG 
AATGCGGCGT CTGTAAAGGC TGGCATAAGC AAGGACGCTA TCCGCAATAT TCAACGCGCC 
TGCAAAAGCG GTCGCGACGG AATATCCATA ACAACTCTCA TTAAACTTGC ACCCGTATTG 
CAGACTACGC CATCATGGCT GCTGGAAGGG AGCAGCAATG CGAATCAGTT CAGGGTGCCC 
AAAATTTCGT GGGTAAGCGC TGGAGCTTTT GACACTGCCG ACACGGTACA CAGCTTTGAT 
GAGTTCCCAA CAATCGAAAC CTCGGGCCTG CCGGATGGTG ACTGGGTGGC TTTGGAAGTA 
CAGGGCGATT CAATGGATCG CATATCTCCG CCCGGCTCTG TGATCTTCGT GAACCGAGCA 
GACCGCAAGT TAAGCCATAA TGCGTGCTAT ATCATTCAGG ACGTTGATGG CAGCGCAACC 
TACAAAAGGT ATCGCCAAAG CCCAATGAGA TTTGAGCCGG TATCGACAAA TCCGGAACAC 
GAGACAATAT ATCCAAATGA CAACAGTACA CCCAATGTGT TTGGGCGGGT GTCTCGGTCT 
GTTATCGAAA TGTAA 

 

Protein sequence

MLMDILNRIQ ERLDTVGLSA NAASVKAGIS KDAIRNIQRA CKSGRDGISI TTLIKLAPVL 
QTTPSWLLEG SSNANQFRVP KISWVSAGAF DTADTVHSFD EFPTIETSGL PDGDWVALEV 
QGDSMDRISP PGSVIFVNRA DRKLSHNACY IIQDVDGSAT YKRYRQSPMR FEPVSTNPEH 
ETIYPNDNST PNVFGRVSRS VIEM