| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1951 |
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| Symbol | intD |
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| ID | 7387244 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1612077 |
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| End bp | 1613108 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643651207 |
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| Product | phage-related integrase |
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| Protein accession | YP_002549403 |
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| Protein GI | 222148446 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4973] Site-specific recombinase XerC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.242299 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | CTGCCTTCGG GCAATGTACG TTATCGCGTC CGGGTGATTG GCAACCCGAA ACAGCGGATT
CGCATTTTTT GCCTGCCAGG CGATGAAGAT TTCAGCCGCC AATATACGCT TGCCCGCTAT
GGAGAACAGC CGGTACCTTT GAAGAAGGCA TCCGAGGTGG TCAAGCCCAG GTCCATAGGC
TGGCTGGTGC ACAGTTATTT TGAATACATG GAGCAAAGGG TAAAGGCCCG CCTCTCCAGC
GCAAAAACGC TGAAGAAGAA ACGAAACCTG CTGGCGCGGC TGATTGAGGA CCCAGACCGG
ATCATGATCA TCCCTCAACC AAAGCTGATC GAAATGCAGG ATAAAATGGC CAGTACGCCC
GCCCAAGCGG ACGCGTTCAT CGAATCTATC AGCGTCATGT ATGAGTGGGC AATCAAGCGA
GGCCACCTCA AAACCAATCC AGCTAAGGGA ATTGACCGGA TCTATAAAAA AGGCGACGGG
GCAACGCCCT GGAAATCAGC CGATGTGAAA CGCTTCTTTG CCTACCACAA GCCTGGTTCC
AAGCCTTTCA TTGCAATGTC CATTCTCCTT TGGACGGGTT GCCGCATCGA AGACCTGACA
TTCCTTGGCC CAAGGCATGA GTGCATTCTG GACGGGCTGG AAGCGCTGCG ATGGGTGCCC
GCAAAGAAGG GCTCATCGGA AGTGACCATT CCCCTGCTCA AGCCCTTAAA AGCCGCCATC
CATAGCCAGG CCGTCATTGC AGAGACCTAC ATCGTTGCAC GCGGCAACAA ACCCTTCGCC
AGCGGTGATT CCATGTCGGC CATGTTCAAG CGCTGGTGCA TTGACGCCGG CCTGAACCAC
CTTTCCGCTC ACGGTGTGCG CAAAGGCCTG GCCGAGTTGC TGGCAGAACA AGGATGCAGC
CAATATGAAA TAATGGCCAT TCTCGGCCAC TCAGAAGCTA AAACAAGTGA GGTTTACACC
CGCCGCGTGG AGCGCTGGAA GCTGGCACAG CAAGCGATGG ACCGGCTAGA TGTCTCAGAT
GCTTGGCTGT GA
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| Protein sequence | MPSGNVRYRV RVIGNPKQRI RIFCLPGDED FSRQYTLARY GEQPVPLKKA SEVVKPRSIG
WLVHSYFEYM EQRVKARLSS AKTLKKKRNL LARLIEDPDR IMIIPQPKLI EMQDKMASTP
AQADAFIESI SVMYEWAIKR GHLKTNPAKG IDRIYKKGDG ATPWKSADVK RFFAYHKPGS
KPFIAMSILL WTGCRIEDLT FLGPRHECIL DGLEALRWVP AKKGSSEVTI PLLKPLKAAI
HSQAVIAETY IVARGNKPFA SGDSMSAMFK RWCIDAGLNH LSAHGVRKGL AELLAEQGCS
QYEIMAILGH SEAKTSEVYT RRVERWKLAQ QAMDRLDVSD AWL
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