Gene Avi_1887 details

Gene Information

• Locus tag: Avi_1887
• ID: 7387199
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1558576
• End bp: 1562001
• Gene Length: 3426 bp
• Protein Length: 1141 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643651161
• Product: hypothetical protein
• Protein accession: YP_002549358
• Protein GI: 222148401

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGAGAAA TCCGGGGCGA GAAAATCCGT TTTCGCAAAG GCGACATTGT TGCCCTCGAG 
ACCTTGCCGT CCTCGCAGGT CGATGATCCC TTGATTGTGC ACTGCCCGCG CCGACGTGGC 
CCTCTGACCA GATTGATGCG GTTTGGGGCC TATATCGTGC TGTCGCTGAT GGCCATGCTG 
GGGGCGGCGG CCATTGCGAT TGAAACCGGT ACGCTGGACC AGGCCCTGTC GACCGGTGCG 
CGCGCTGCTT TTCAATCTGC GATTGGCGAC GACCTGAAAG CCGATATCGA CCAGACCTCC 
ATCCGTCTTT CCAAGAATTT GCATCTGGCG GTCGCCGCGC AGAATGTCAC CCTGACCGAT 
CCGAAGACCC AGCAGGTGGT CTCCAAAGCC GGCGACGTCA AACTGGTCAT CGATCCGATC 
TCGCTGCTGA TGGGGCGGGT TTCCGTGACC GAAATCGACG TGACTGGCAT CGATTTCGAT 
AGTTCACGGC TGTTGCAGGG CGGCGATCTG GATCTTGCCA CGCTGCGGAT CGACAAGTTT 
CCGGCGTTCA TGGAGACGAT GTTCGGCAAT CTCGACGATG TACATGGCTT CATTGTCCGG 
GGAGGTCTGG ATCGGCTGCG CCTTGGGGGT ATTACCTTGC CTGCCAAAAA TGGAATTGGT 
CAGCCGGTTG ATGTGCAGGT CAACGATCTG ACATTGACAC GCAGGAAGGA CGATTCGCTT 
GCCATCCAGG GTGAGACGTC TATCAACGGC AAGGTCAGCA TGATCTCCGC CGAGGCGATG 
ACTGACGGAG CCCGCACCAC GTCGTTGACT GCAACGGTGA CGGATCTGAT CGCCACGCCC 
TTCCTGATCA AGCGCACGCC CACAGGGGTC TGGCGGGACG GGGCCGATAC CAGCATCAAT 
ATCGATTTCT ATGCCTTGCG GCAATCACAA AGCCAGAAAC CGGCTCTCTC GGCGCGATTG 
CGGACGGAAA ACGGCATCCT CTACGTTGAT GGCGACAAGC AGGACCTGAC GCGGGCCGAC 
ATCAATCTCG CCTATGATTT TGACAAGCTG ACGGCGGAAA TCCGGCCCTC TGAGGTGGAT 
TTCGGCCCGA CCCATGTCCC GTTCTCCGGC GGGTTCATCG ATCTTGATCG GTTGCAGTCA 
GTGCCGGGCG ATGCCCGGGG TATCGGCATC GACCTGCTGG TCGATCAGGG CACGGCTTCG 
GTGGAATCGT CGGGAGAGCA GCCGTTTCCG TTTTCTCTCA AGGCCTTTGG ACAATTCATT 
CCCAGCCAGC GTCATTTGAC ATTCAGCGAG TTGGCGGTGT CGACGCCACA TGGCAGCATG 
CAAGCCACGC TCAATGTTCA GTTTGGCAAC GCCTCGCCGG AAATCCGTTT CAACGGCAAA 
CTGTTCGAGA TGCGCACCGC CATGGTCAAG CAGCTCTGGC CCTATTGGAT GGCCATGAAG 
CCACGCACCT GGGTCCAGGC CAATCTGTTC GGCGGCACGA TCAGCAATGC CTCGATTGAT 
GTGCTCATTC CTGCCGGGCG GATGAAACCT ATACCCCAAC CTCTGGATCT GGGGCCTGAC 
GAGCTGAAAA TCGCTTTCGA TATCAGCGGT GCGCGAATGA ACGTCACTGG CGATCTGCCG 
CCGATTCGTG ATCTTGCCGG ACATTTTGAC CTCACAGGGC CGGATCTGGA AGTGCGCATC 
GATGGCGGCA CGTCCTATTT CCCTTCGGGA CGCAAGGTCA AGTTGGACAA AGGCACATTT 
GCGATCGCCA ATACCTACAA GAAGCCGTTG ATGGCCAATA TCGCCGTTTC CGTCAGCGGC 
CCGGCTGACG CCATGGCGGA ACTTGCAACC TTCAAGCCCA TGCAAGCCTT GCAACGCACG 
GAATTCGTGC CGGAGGATTT TGCAGGCGAG ATCAAGGCCG ATGTTCAGCT CTATGGCGGC 
ATCATCGCCG ATCAGAAACC TCCACCGGAA GTGTGGAAGG CCTCTCTGGA TATGAAGGGG 
GTCGATCTCA AGCGGCCCTA TATGGACAAG AAGATCACCG GCTTCGATGG CACGCTGGTC 
GTGGATCCGC AAAATGCTGT ACTGCAAGGG GACGCCCAGA TCGATGGCGT GCCGGTGGAG 
ATCGACTTCT CCCAGCCGGT CGACCGCGGT TCCAATAGAG CGCCTAGCTG GACGGTGAAA 
GGACAGCTGA ACGACAGCCA GCGCGCCAAG CTCGTGCCGG GCCTTGGCGA CATTGTTGGT 
GGCACCATCG ATCTGGAAGT GTCGCGCCTC GATGACAATC GCCAACTGGT GAAAAGCGAC 
CTGTCGCGCG CGACTTTGAA CGTCCCGGTT ATTGGCTGGA CCAAGGGTTC CGGCATTCCC 
GCCAAGGTGT CGATGGAATT GCAGGACAAG TCCGGCCTGT TCATGCTCGA CAAGTTCAAT 
CTCGACGGCG ACGGGTTCGG GGCGACTGGC AAGCTTGTGG TATCCAAAAC CAATGGGCTG 
GTTGGGGCGG ATCTCGACCA TGTCAAACTG GCCTCCGCCG ATGATTTCGG CCTTTCGGTT 
CAGGTCAACA AGGGTGTCAT CAACGCAAAG GTCAGTGGTA GCAGTGTTGA TGGCCGTGTT 
TTGCTGAAGA AGCTGAAATC CGGCAGCTCT TCCAATGGTG CGACTGGCGA CGGTCGATCG 
TCAAGCAATT CGACCGATGT CGATATAAGT GTCGATGTCG ATAAGCTGAT TGGCTTCAAT 
GACGAAGCCC TTTCCGGCGT CAGGCTGGTC TATGGTTCCC GATCGGGGGC AGTAACGGCG 
CTGAAAATGA GTGCCGTGAC CGACACCGGC CAAGCGGTCG TTGTCCAGTC GGCCAAGGCT 
GGAAATGGCA ATGAGATATC GCTGATTTCC AGCGATGCAG GCACGTTGGT GCGGTTCGTC 
GATCTCTATA GCCATATGCG CGGCGGCATG CTGGATGTGA AAATCCGTGG CGATCTGAAC 
AAGAACTGGA TGGGCAATGT TGATCTGCGC AATTTCCGGG TCGAGAATGA GGATCGGTTA 
CAGAAAATCG TCACGACCCC GGCAACCGAT GATGGGCGTA GCCTGAATAC GGCGGTCAAA 
CGTGACCTGG ATGTCAGCTC GGAAAAATTC CAGCGGGCCT TCGCCCGGCT GATCTATCAG 
GACGGCGTGC TCAGGACCGA TAACGGCATT GTCCGGGGCG AACAGGTCGG CGCATCGTTC 
CAGGGCACCA TCAAGGATAC CAGGGGCCAG ATGGAAATGA CCGGGACATT CATGCCCGCC 
TATGGTCTCA ATCGGCTGTT TGCGGAAGTG CCGATTATCG GTGCCATCCT TGGCAATGGC 
CGGGACCGTG GCCTTTTGGG CATTACCTTC AAGCTAAAAG GCCCGGTCGA TGCCCCGCAT 
CTGGTGGTGA ACCCGCTATC GATTATCGCC CCCGGCATGT TCCGCCAGAT CTTCGAATTC 
CAATAG 

 

Protein sequence

MGEIRGEKIR FRKGDIVALE TLPSSQVDDP LIVHCPRRRG PLTRLMRFGA YIVLSLMAML 
GAAAIAIETG TLDQALSTGA RAAFQSAIGD DLKADIDQTS IRLSKNLHLA VAAQNVTLTD 
PKTQQVVSKA GDVKLVIDPI SLLMGRVSVT EIDVTGIDFD SSRLLQGGDL DLATLRIDKF 
PAFMETMFGN LDDVHGFIVR GGLDRLRLGG ITLPAKNGIG QPVDVQVNDL TLTRRKDDSL 
AIQGETSING KVSMISAEAM TDGARTTSLT ATVTDLIATP FLIKRTPTGV WRDGADTSIN 
IDFYALRQSQ SQKPALSARL RTENGILYVD GDKQDLTRAD INLAYDFDKL TAEIRPSEVD 
FGPTHVPFSG GFIDLDRLQS VPGDARGIGI DLLVDQGTAS VESSGEQPFP FSLKAFGQFI 
PSQRHLTFSE LAVSTPHGSM QATLNVQFGN ASPEIRFNGK LFEMRTAMVK QLWPYWMAMK 
PRTWVQANLF GGTISNASID VLIPAGRMKP IPQPLDLGPD ELKIAFDISG ARMNVTGDLP 
PIRDLAGHFD LTGPDLEVRI DGGTSYFPSG RKVKLDKGTF AIANTYKKPL MANIAVSVSG 
PADAMAELAT FKPMQALQRT EFVPEDFAGE IKADVQLYGG IIADQKPPPE VWKASLDMKG 
VDLKRPYMDK KITGFDGTLV VDPQNAVLQG DAQIDGVPVE IDFSQPVDRG SNRAPSWTVK 
GQLNDSQRAK LVPGLGDIVG GTIDLEVSRL DDNRQLVKSD LSRATLNVPV IGWTKGSGIP 
AKVSMELQDK SGLFMLDKFN LDGDGFGATG KLVVSKTNGL VGADLDHVKL ASADDFGLSV 
QVNKGVINAK VSGSSVDGRV LLKKLKSGSS SNGATGDGRS SSNSTDVDIS VDVDKLIGFN 
DEALSGVRLV YGSRSGAVTA LKMSAVTDTG QAVVVQSAKA GNGNEISLIS SDAGTLVRFV 
DLYSHMRGGM LDVKIRGDLN KNWMGNVDLR NFRVENEDRL QKIVTTPATD DGRSLNTAVK 
RDLDVSSEKF QRAFARLIYQ DGVLRTDNGI VRGEQVGASF QGTIKDTRGQ MEMTGTFMPA 
YGLNRLFAEV PIIGAILGNG RDRGLLGITF KLKGPVDAPH LVVNPLSIIA PGMFRQIFEF 
Q