Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1882 |
Symbol | |
ID | 7387196 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 1555565 |
End bp | 1556857 |
Gene Length | 1293 bp |
Protein Length | 430 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643651158 |
Product | membrane protein associated metalloendopeptidase |
Protein accession | YP_002549355 |
Protein GI | 222148398 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGAAGA CACGCAGCCG CAAGGGCTTC AGCAAGCGTC AGCGCCAACA GCATGTCCTT ATCCTCGCAT CCGGGGAAAC CATTCGCCAT ATGACCCTGC GTCCGTGGAT GGCAGGTGCA GGTCTTTGCC TGGCGGTTGC CGGCGTGGTC GGCTATCTCG GCGCGACCTC CTATCTCATC ATGCGCGATA ATCTGATCGG TGCCTCCATG GCCCGCCAGG CGCATTTGCA GCACGATTAC GAAGACCGGA TTTCCGCCTT GCGCGCCCAG GTCGACCGGG TCACGTCCCG GCAATTGCTG GACCAGCAGG TGGTGGAGGA AAAGCTTCAA ACCCTGCTCG AAAAGCAGAT GGCGCTTTCT GCCCGTTCCG GCAAGCTTGG ATCGCTTCTG GACCGTGCAG AGGAATCCGG CCTGACGCCG AATGAGCCTT CAGCGCCTGT GATGCCGGAT AAATCCGCGT CCGTCGCACC TGTGGGTAAG GGCAATGCAC TGGCCGCCCT GAATCGGATG CTCCATACCG GCCCCGCAGA CACACAGGAA AGCGATGGCC CGGCATTGGG CTTTATGCCT GCCCATGAAA GCGGCGCCGA CCGGGCCGAC CGGGTTTTCC GCAACGTGAC CCTGTCGCTG AAATCCATCG AACAACAACA GAAATCAAGC ATCCATGCAC TGACCGCCGA GGCGAGCGAC AAGGCCAACA CCATCGAGCA GGTCTTGACC GACAATGGCA TCCGGATCGA CACGCCTGAT GCTGGCAAGG ACGGAATGGG TGGCCCCCTG GTCGATGCCG ACCCGAAACT CGGAATCGAT ACCAGTCTCG ACGGATTGGA TAGCGCCCTC AATCGCCTGG ATGCCGCCCG CGAAACGGCA AAGGACATGC CTTTTTCAAA CCCTGCCGCC ACACGTGAAA TCACCAGCCC GTTCGGCAAC CGCCCTGACC CGCTGCTTGG ACGGCTGGCC ATGCATACCG GCATAGATTT CCGCGCAACA AATGGTTCTC CCGTCAAAAG TGCCGGTGCT GGAACCGTCA TTACGGCCGG ACCGACGGGC GGCTATGGGA ATATGGTGGA AATCGATCAT GGTCAGGGAC TGTCCACCCG TTACGGCCAT ATGTCGAAAA TCCTCGTTCG TCCGGGCGAA AAAATCGAGG TTGGCCAGTT GATTGGCCTT TCCGGATCGA CCGGGCGCTC CACCGGGCCA CACCTGCATT ATGAAATTCG CAAGAACGGC AACCCGATCA ATCCGATGAG CTTTCTGGCT TCCGGAATGA CACTGAAGCC ATTTATTGAG TAA
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Protein sequence | MMKTRSRKGF SKRQRQQHVL ILASGETIRH MTLRPWMAGA GLCLAVAGVV GYLGATSYLI MRDNLIGASM ARQAHLQHDY EDRISALRAQ VDRVTSRQLL DQQVVEEKLQ TLLEKQMALS ARSGKLGSLL DRAEESGLTP NEPSAPVMPD KSASVAPVGK GNALAALNRM LHTGPADTQE SDGPALGFMP AHESGADRAD RVFRNVTLSL KSIEQQQKSS IHALTAEASD KANTIEQVLT DNGIRIDTPD AGKDGMGGPL VDADPKLGID TSLDGLDSAL NRLDAARETA KDMPFSNPAA TREITSPFGN RPDPLLGRLA MHTGIDFRAT NGSPVKSAGA GTVITAGPTG GYGNMVEIDH GQGLSTRYGH MSKILVRPGE KIEVGQLIGL SGSTGRSTGP HLHYEIRKNG NPINPMSFLA SGMTLKPFIE
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