| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1880 |
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| Symbol | |
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| ID | 7387195 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 1553603 |
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| End bp | 1555054 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651157 |
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| Product | DNA photolyase |
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| Protein accession | YP_002549354 |
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| Protein GI | 222148397 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0415] Deoxyribodipyrimidine photolyase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCAAATG CCCACCCTAG TCCAACCATC CTGTGGTTCC GCAAGGACCT GCGTCTCGAT
GACAACAGGG CGCTTCTGGC GGCATTGCAG GCCGCAGGCC CGGTCATCCC TCTCTACATT
CGCGAGCCTG AGGAAATGGG TACCGGCCCG CTCGGTCCGG CACAGGCATG GTGGCTGCAT
CACTCACTCG TCAGCCTCGA CCAGTCACTT CAATCCTACG GCAGCCGATT GGTTCTTCGC
CGCGGCCCAC CGGGCCAGGT CCTGCGCCAT CTGATTGAGG AAACCGGCTC CAAAGCCGTC
CACTGGAATC GCCGTTACGA TCCGTCCGGC ATGGCCATCG ATGCGGAGCT GAAAGCCGCT
CTGCGCAGCG ACGGGCTTGA AGCCACTAGC CATGCCGGCT TCCTGCTGCA TGAACCGTCG
AAGGTGAAAA CCGGGAGCGG CGGGCCTTTC CGTGTCTACA CACCCTTCTG GCGAGCTCTT
GAAAAGCAAG GCGATCCACC GCCGCCCGTC GAGAGACCCA AGACCTTGCA CAACCCTGCC
CATTGGCCGG ATAGCGACCG GTTGGAAGAC TGGCAACTGC TGCCGACCAA GCCAGATTGG
GCAAAGGAGT TTTCGGAAAT CTGGACTCCG GGAGAGCCCG GCGCTCAGGA CAAACTGAGC
CAGTTTATCG ATCATGGCCT CAAGGGTTAC CGCACGCAGC GGGATTTCCC CGCCCTGCCC
CATACATCCG GCCTGTCGCC GCATCTGGCG CTCGGGGAGA TTTCTCCGGC GCGTATCTGG
CATGCAACCA TCGGCCTTGG CGATGATGTG TCCACCGACG ACTATGTGCA TTTTCGAAAA
GAGCTGGTCT GGCGCGAATT TTCCTACCAT CTGCTGTTTC ACTTTGCCGA TCTGGCCAGC
CAAAACTGGA ACGACCGCTT CAATGACTTT CCCTGGAAGA AGAACGCGGA ATTTCTATCC
GCCTGGCAGC GGGGCCAGAC TGGCTATCCG ATTGTCGACG CAGGCATGCG CCAGCTTTGG
CGACATGGTG TCATGCACAA TCGTGTGCGC ATGATTGTCG CTTCCTTTCT GATCAAGGAC
CTGATGATCG ACTGGCGCGA AGGCGAAGCC TGGTTTCGTT ACACATTGGT CGATGCCGAT
CCAGCGTCCA ATGCCGCCAG CTGGCAATGG GTGGCTGGCT CCGGCGCCGA TGCCTCACCG
TTTTTCCGGA TTTTCAACCC GATTACCCAG AGCGAGAAAT TCGATCCGGA CGGCGACTAT
ATCCGCCAAT TCGTGCCAGA GCTGGCAAAA CTGCCAAACA ACCTGATCCA TCGCCCATTC
GAAGCCCCCG CCCCCCTGTT GGAAAAGGCG GGGATTACGC TTGGCAAAAC CTATCCAGCG
CCACTGGTAG ATCACAAAAG AGCCAGAGCC GTGGCCCTTG AGGCTTATAA ATCAACCGGC
TCGCCGGACT GA
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| Protein sequence | MPNAHPSPTI LWFRKDLRLD DNRALLAALQ AAGPVIPLYI REPEEMGTGP LGPAQAWWLH
HSLVSLDQSL QSYGSRLVLR RGPPGQVLRH LIEETGSKAV HWNRRYDPSG MAIDAELKAA
LRSDGLEATS HAGFLLHEPS KVKTGSGGPF RVYTPFWRAL EKQGDPPPPV ERPKTLHNPA
HWPDSDRLED WQLLPTKPDW AKEFSEIWTP GEPGAQDKLS QFIDHGLKGY RTQRDFPALP
HTSGLSPHLA LGEISPARIW HATIGLGDDV STDDYVHFRK ELVWREFSYH LLFHFADLAS
QNWNDRFNDF PWKKNAEFLS AWQRGQTGYP IVDAGMRQLW RHGVMHNRVR MIVASFLIKD
LMIDWREGEA WFRYTLVDAD PASNAASWQW VAGSGADASP FFRIFNPITQ SEKFDPDGDY
IRQFVPELAK LPNNLIHRPF EAPAPLLEKA GITLGKTYPA PLVDHKRARA VALEAYKSTG
SPD
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