Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1846 |
Symbol | rpsC |
ID | 7386808 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1535982 |
End bp | 1536662 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643651132 |
Product | 30S ribosomal protein S3 |
Protein accession | YP_002549329 |
Protein GI | 222148372 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00843492 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | CTGGGCATTA ACAGGACCTG GGATAGCCGT TGGTTCGCCG ACAACGCTGA ATATGGCAAG CTTCTTCATG AAGACCTGAA GATCCGCGCC TATTTGATGG ATGAGCTGAA GCAGGCCGGT ATCGCCAAGG TGGTTATCGA GCGTCCGCAC AAGAAGTGCC GCGTCACGAT CCACTCGGCG CGTCCGGGCC TGATCATCGG CAAGAAGGGT GCAGACATCG AAAAGCTTCG CAAGAAGCTT TCCGAGATGA CCAATTCCGA AACGCACCTC AACATTGTTG AAGTGCGCAA GCCGGAAGTC GATGCAACGC TGGTCGCTCA ATCGATCGCC CAGCAGCTCG AGCGCCGTAT CGCGTTCCGT CGTGCGATGA AGCGCGCCGT ACAGTCCGCC ATGCGTCTGG GTGCCGAAGG CATCAAGATC ACCTGCGCTG GCCGTCTCGG TGGTGCCGAA ATCGCTCGTA CGGAATGGTA CCGCGAAGGT CGCGTGCCGC TTCATACGCT GCGTGCCGAT ATCGATTACG GTGTAGCGGA AGCTACAACC GCTTATGGTA TTTGCGGCAT CAAGGTCTGG ATCTTCAAGG GCGAAATCCT TGAGCATGAT CCAATGGCCT CCGAGCGCCG GGCGCTGGAA AGCGACGCCC AAGGCGGCAA CAACAACAAC CGTCGTCGCG AGAACGCCTG A
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Protein sequence | MGINRTWDSR WFADNAEYGK LLHEDLKIRA YLMDELKQAG IAKVVIERPH KKCRVTIHSA RPGLIIGKKG ADIEKLRKKL SEMTNSETHL NIVEVRKPEV DATLVAQSIA QQLERRIAFR RAMKRAVQSA MRLGAEGIKI TCAGRLGGAE IARTEWYREG RVPLHTLRAD IDYGVAEATT AYGICGIKVW IFKGEILEHD PMASERRALE SDAQGGNNNN RRRENA
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