Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1840 |
Symbol | rplC |
ID | 7386802 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 1532851 |
End bp | 1533492 |
Gene Length | 642 bp |
Protein Length | 213 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 643651126 |
Product | 50S ribosomal protein L3 |
Protein accession | YP_002549323 |
Protein GI | 222148366 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0087] Ribosomal protein L3 |
TIGRFAM ID | [TIGR03625] 50S ribosomal protein L3, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.053801 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTTCAG GTGTGATTGC ACAGAAAGTG GGAATGACCC GGGTCTATAA TGACGCCGGC GAGCATGTCC CGGTAACAGT ACTACGCTTG GATAACTGCC AGGTCCTGGC TCAGCGGACT GTCGATAAAC ACGGCTACAC TGCCGTTCAG CTCGGCGCCG GTCAGGCCAA GGTCAAGAAT ACATCCAAGG CAATGCGCGG CAATTTTGCC GCTGCAAACG TCGAGCCCAA GGCTAAGCTC GTCGAATTTC GCGTTTCCGA AGACAACCTC ATGGATGTCG GCTCCGAGCT GAAGGCTGGT CATTTTGAAG CCGGTCAGTT GGTTGACGTG ACCGGCACCA CGATCGGTAA GGGTTTTGCC GGTGCCATGA AGCGCCACAA TTTCGGTGGT CTTCGTGCAA CCCACGGCGT GTCCGTCTCG CACCGTTCAC ACGGCTCGAC CGGTTCCAAC CAGGATCCGG GTAAGGTCTG GAAGGGCAAG CGTATGGCCG GTCACATGGG TCAGACCCGC GTCACCACCC AGAATCTGGA AGTCGTTTCG ACCGATGAAG ATCGTGGCCT TATCCTGGTG AAGGGCGCTG TGCCCGGTTC CAAGGGTTCC TGGATCATCG TGCGCGACGC CGTCAAGTCG GCAGCGAAGT AA
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Protein sequence | MRSGVIAQKV GMTRVYNDAG EHVPVTVLRL DNCQVLAQRT VDKHGYTAVQ LGAGQAKVKN TSKAMRGNFA AANVEPKAKL VEFRVSEDNL MDVGSELKAG HFEAGQLVDV TGTTIGKGFA GAMKRHNFGG LRATHGVSVS HRSHGSTGSN QDPGKVWKGK RMAGHMGQTR VTTQNLEVVS TDEDRGLILV KGAVPGSKGS WIIVRDAVKS AAK
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