| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1792 |
|---|
| Symbol | aspB |
|---|
| ID | 7386772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1493776 |
|---|
| End bp | 1494933 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643651092 |
|---|
| Product | aspartate transaminase |
|---|
| Protein accession | YP_002549293 |
|---|
| Protein GI | 222148336 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGTTATGC TTTCCACCCG CAGTGCTGTC GAACCGTTTC ACGCCATGGA TATTCTGGCC
GAGGCCAACC GCTTGAAGGC CGCTGGCCAT CCGGTGATTT CGCTTGCCGT GGGCCAGCCT
GGGGCACCAG CGCCCGAGCG GGCGATCCGA GCGGCGGAAG TGGCGTTGCG GGCGGGCCAG
ATCGGCTATA CCGACGCCCT CGGCCGTGCC GATCTGCGTC AGGGGCTTGC CGATTATTAT
CGTCGTCGCC ACGGCACGGA GGTCGCGGCG GAGCGGATCA TGGTGACGAC GGGCTCGTCG
GCGGGCTTCA ACCTGGCATT TCTGACGCTG TTTGAGGCAG GCGACGCGGT GGCCATCGCC
CGGCCCGGCT ATCCCGCCTA TCGCAACATC CTGAAGGCGC TGGGATTGGT GGTGATTGAA
GTGCCAGTCG GTCCCGAGAC TGATTTCACG CTGACTCCCG ACAGTCTGGA GCGTGCGGCA
AGGGCAGCGG GTGTACGGCT GAAAGGCGTG CTTCTGGCCA GCCCCGCCAA TCCCACTGGC
ACCGTCACCG GCCGGGCTGC GTTGCAGCGT CTGGCACTGT GGTGCGACGA CAATGGTGTC
AGCTTCATCT CCGACGAGAT CTATCATGGC CTGACCTATG GCGTGGAGGA AGCGAGCGCG
GTGGAATTTG CGCCTGATGC CGTCGTCATT AATTCCTTCT CCAAATATTA TCGGATGACT
GGCTGGCGGA TCGGCTGGAT GGTCCTGCCT CCAGCATTGG TGCGTGGCGT GGAATGCGTG
GCCCAGAGCC TCTATATTTC GGCGCCCGAA TTATCGCAGA TTGCCGCCAT GGCCGCGCTG
GAAGCAGGCG ATGAGCTGGA AGAATACCGA GCCGGTTGCC GCGCCAATCG TGATTTTCTC
CAGGCTCGGC TGCCCGCGCT GGGCATGCCG CTGCTGTCTC CCATGGATGG CGCTTTCTAT
GCCTATGTCG ATGTCAGCCG CTTCACCAAT GACAGCATGG AGTTTGCCCG AAGATTGCTG
GCGCAAACCC ATGTGGCGGC AACGCCTGGC CTCGATTTCG ATCCGCTGGA AGGCCACCGG
GCCTTGCGGA TCTCCTATGC GGGAACATTG ACCGACCTGA CCGACGCCAC CGACAGAATC
GCCAACTGGC TTGCGTGA
|
|---|
| Protein sequence | MVMLSTRSAV EPFHAMDILA EANRLKAAGH PVISLAVGQP GAPAPERAIR AAEVALRAGQ
IGYTDALGRA DLRQGLADYY RRRHGTEVAA ERIMVTTGSS AGFNLAFLTL FEAGDAVAIA
RPGYPAYRNI LKALGLVVIE VPVGPETDFT LTPDSLERAA RAAGVRLKGV LLASPANPTG
TVTGRAALQR LALWCDDNGV SFISDEIYHG LTYGVEEASA VEFAPDAVVI NSFSKYYRMT
GWRIGWMVLP PALVRGVECV AQSLYISAPE LSQIAAMAAL EAGDELEEYR AGCRANRDFL
QARLPALGMP LLSPMDGAFY AYVDVSRFTN DSMEFARRLL AQTHVAATPG LDFDPLEGHR
ALRISYAGTL TDLTDATDRI ANWLA
|
|---|
| |