| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1717 |
|---|
| Symbol | nuoE |
|---|
| ID | 7386714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1430956 |
|---|
| End bp | 1431756 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643651034 |
|---|
| Product | NADH dehydrogenase subunit E |
|---|
| Protein accession | YP_002549235 |
|---|
| Protein GI | 222148278 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1905] NADH:ubiquinone oxidoreductase 24 kD subunit |
|---|
| TIGRFAM ID | [TIGR01958] NADH-quinone oxidoreductase, E subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTTC GTCGTTTAGC CGAAGATCAA TTCCAGCCCG CATCCTTCGC TTTTAGCGAG
GAAAATGCCG TTTGGGCCGA AGCCACCATC CGCAAATATC CGGAGGGTCG TCAGCAATCC
GCTGTCATCC CGCTGTTGAT GCGGGCGCAG GAGCAGGATG GCTGGGTTAC CAAGGCGACG
ATCGAATTCG TCGCGGACAA GCTCGACATG CCCTATATCC GCGTGCTCGA AGTGGCGACC
TTCTATACTC AGTTCCAGTT GAAGCCGGTC GGCACCAAAG CCCATATCCA GGTCTGCGGT
ACCACGCCCT GTATGCTGCG CGGCTCGGAA GAGCTGATGA AAATCTGTAA GAAAAAGATC
CATCCAGAGC CTCTGGAGCG TAATTCAACC GGGACTCTGT CCTGGGAAGA AGTCGAGTGT
CAGGGTGCCT GCGTCAACGC GCCGATGGTG ATCATTTTCA AGGACGCTTA TGAGGATCTG
ACACCTGAGC GTCTCGAAGA AATCATCGAC GCCTTCGAAG CCGGCAAGGG TGTAGAGGTC
AAGACAGGCC CGCAGATTGA GCGGGTGTTT TCTGCGCCTG AAGGCGGGCT GACCAGCCTG
ACGGAAGAGA TCACCCCGGT CCGTTGGGGC GAGGGGCAAT CAGGGCAGGA TGAGGCAGCG
GTTCCTCCAT CCAACGCGGC CCGCCCGGTC ACCGATACGC CGGTTACCGA TCCGAAGCTG
AAGACGCCTG CTACCGACAA ACCGGCAGCG AGCGAGAATG CGAAAGTCTC CGGCGACACT
GCCGACAAGG CCAAGGGGTG A
|
|---|
| Protein sequence | MSVRRLAEDQ FQPASFAFSE ENAVWAEATI RKYPEGRQQS AVIPLLMRAQ EQDGWVTKAT
IEFVADKLDM PYIRVLEVAT FYTQFQLKPV GTKAHIQVCG TTPCMLRGSE ELMKICKKKI
HPEPLERNST GTLSWEEVEC QGACVNAPMV IIFKDAYEDL TPERLEEIID AFEAGKGVEV
KTGPQIERVF SAPEGGLTSL TEEITPVRWG EGQSGQDEAA VPPSNAARPV TDTPVTDPKL
KTPATDKPAA SENAKVSGDT ADKAKG
|
|---|
| |