Gene Avi_1620 details

Gene Information

• Locus tag: Avi_1620
• Symbol: nusB
• ID: 7387412
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1355453
• End bp: 1355935
• Gene Length: 483 bp
• Protein Length: 160 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650961
• Product: transcription antitermination protein NusB
• Protein accession: YP_002549166
• Protein GI: 222148209
• COG category: [K] Transcription
• COG ID: [COG0781] Transcription termination factor
• TIGRFAM ID: [TIGR01951] transcription antitermination factor NusB

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGACCG AAAATAACAA ACCGCCGGTC AAGACCGCCA ACCAGCGCGG TGCCGCGAGG 
CTTGCCGCCG TGCAGGCCCT CTATCAGATG GATATCGGCG GCACTGGCGT TCTCGAAGTC 
GTTGCTGAAT ACGAGACCCA TCGTCTCGGT CAGGAAATCG ACGGCGAAAC CTATCTGAAG 
GCCGATGCCT CCTGGTTCCG CTCCATCGTG GCCGGTGTGG TCCGCGACCA GACCAAGATC 
GATCCGCTGA TCCGTCAGGC CTTGCAGGAC GATTGGTCGC TGGCCCGGGT GGACAGCACG 
GTGCGGGCCA TTCTACGCGC TGGCACGTTC GAATTGCTGG AGCGCAAGGA CGTACCCATT 
GCGGTGATCG TCACGGAATA TGTCGAGATT GCCCACGCCT TTTTCCAGGA AGACGAGCCC 
AAGCTGGTCA ATGCGGTGCT GGACCGGATT GCCAAGCAGG TCAGGGTTCC CGCAGTCAAG 
TAA 

 

Protein sequence

MTTENNKPPV KTANQRGAAR LAAVQALYQM DIGGTGVLEV VAEYETHRLG QEIDGETYLK 
ADASWFRSIV AGVVRDQTKI DPLIRQALQD DWSLARVDST VRAILRAGTF ELLERKDVPI 
AVIVTEYVEI AHAFFQEDEP KLVNAVLDRI AKQVRVPAVK