Gene Avi_1614 details

Gene Information

• Locus tag: Avi_1614
• Symbol: ribc
• ID: 7387409
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1353406
• End bp: 1354020
• Gene Length: 615 bp
• Protein Length: 204 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650958
• Product: riboflavin synthase subunit alpha
• Protein accession: YP_002549163
• Protein GI: 222148206
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0307] Riboflavin synthase alpha chain
• TIGRFAM ID: [TIGR00187] riboflavin synthase, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

CTGATGTTTA CTGGCATTGT CACCGATATC GGCACCGTGG AAGACATCGT GCCTCTGAAG 
GAAGGCGTAA AGCTTCGCAT CGTCACAGCC TATGATCCTC ATACAATCGA CATGGGCGCT 
TCCATCGCGC ATTCCGGGAC CTGCCTGACA GTCACCGGTC TGCCAGAGGC GGGCAGCAAT 
GCGCGGTGGT TTGAAGTGGA AGCCTGGGAA GAAGCCCTGC GGTTGACCAC CATCGGTAGC 
TGGCAAAAAG GCACGCGCAT CAACCTGGAG CGCTCGTTGA AAATCGGCGA TGAGCTGGGC 
GGGCATATCG TCTCGGGCCA TGTCGATGGC AAGGCCGAGA TCCTGGCGAT CAAAGCCGAA 
GGCGATGCGA CCCGCTTCAC TCTGCGGGTG CCTGAGAACC TGGCCCGTTT CGTCGCCCCG 
AAGGGCTCGG TTGCGCTGGA TGGAACCTCG CTGACCGTCA ATGGTGTCGA GGGTTGCGAC 
TTCGACATCC TGCTGATCCG CCACACGCTG GAAGTGACCA CCTGGGGCGA CCGGCAGGTC 
GGCGATTTCG TCAATTTCGA AGTCGATACC ATGGCACGCT ATGCGGCAAG GCTCGCGGAA 
TTTCCTAAGG CGTAA 

 

Protein sequence

MMFTGIVTDI GTVEDIVPLK EGVKLRIVTA YDPHTIDMGA SIAHSGTCLT VTGLPEAGSN 
ARWFEVEAWE EALRLTTIGS WQKGTRINLE RSLKIGDELG GHIVSGHVDG KAEILAIKAE 
GDATRFTLRV PENLARFVAP KGSVALDGTS LTVNGVEGCD FDILLIRHTL EVTTWGDRQV 
GDFVNFEVDT MARYAARLAE FPKA