Gene Avi_1583 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1583 
Symbol 
ID7387385 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand- 
Start bp1323561 
End bp1324052 
Gene Length492 bp 
Protein Length163 aa 
Translation table11 
GC content62% 
IMG OID643650934 
Producttranscriptional regulator LysR family 
Protein accessionYP_002549139 
Protein GI222148182 
COG category[K] Transcription 
COG ID[COG1321] Mn-dependent transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.104279 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGGCGCGCA CGTCACCTTC AAAGCCCCGG ACCGTTTCCC TGCCGGATGC CGACGCCCAT 
TCTGAAGGCT TCCGGCAGGC GCGCGAGGCG CAACGCAGCG CGCTGGTGGA GGATTATGTC 
GAACTGATCG CAGATCTGAT CGCCGAAGGT CAGGAGGCCC GTCAGGTCGA TATCGCCCAA 
CGGCTCGGCG TCGCCCAACC GACCGTGGCC AAGATGCTGG CCCGACTGAC CGAGGGCGGT 
CTGATTTCCC GCAAGCCCTA TCGCGGAGTC TTCCTGACCC AGGCCGGAGA AAAACTGGCT 
CGGGAAAGCC GGGAGCGGCA CGAGACTGTT GAGGATTTTC TGAAAATGCT CGGCGTCTGC 
GAAAAGACCG CGCGGATCGA CGCCGAAGGA ATCGAGCACT ATGTCAGCGC CGAAACGCTC 
GCGGCCTTTC GTAAAGCGCT GACTGAGGGA CTCGCCGGAT CACGGGCAGA CGAGATCAAC 
GATCACCAAT AA
 
Protein sequence
MARTSPSKPR TVSLPDADAH SEGFRQAREA QRSALVEDYV ELIADLIAEG QEARQVDIAQ 
RLGVAQPTVA KMLARLTEGG LISRKPYRGV FLTQAGEKLA RESRERHETV EDFLKMLGVC 
EKTARIDAEG IEHYVSAETL AAFRKALTEG LAGSRADEIN DHQ