| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1573 |
|---|
| Symbol | |
|---|
| ID | 7387378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 1314813 |
|---|
| End bp | 1315592 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643650927 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002549132 |
|---|
| Protein GI | 222148175 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0730] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACGC TTTTCGCGGC CGTCGGTTCC GGTGGTCTGG TGGGTTTTAC CCTCGGATTA
CTGGGGGGAG GCGGCTCTAT CCTGGCGACG CCGCTGCTGC TCTATGTGGT TGGCGTATCG
CAACCGCATG TGGCCATCGG CACCGGCGCC CTGGCGGTCT CGGCCAATGC CCTTATCAAT
TTTGCCAGCC ATGCCCTGAA AGGCAATGTC CGCTGGCGAT GCGGCGCGGT GTTTGCGGCT
TTGGGCGTCA TCGGCGCATT GGCCGGGTCC TCGCTTGGCA AGGCGATGGA TGGCACGAGG
CTTCTGCTGT TGTTCGGTAT TGTCATGGTG GCCGTCGGGG TGTGGATGCT GCGGCCAAGA
AAAGCGGTGG CTGCTGCTCC GAGGCCGGTG GATCTGCGCA TGTGCCTGAC GACGGCGCTT
GTGGCGCTGG TATCGGGTGC CGCCTCCGGC TTTTTCGGGA TTGGCGGCGG CTTTCTGATC
GTTCCGGGGC TGATCCTTGC GACGGGCATG CCAATGATCA ATGCAGTCGG CACATCGCTT
ATGGCGGTGA CGGCCTTCGG GCTGGCGACG GCTGTGAATT ACGCACTGTC AGGTCTGGTG
GACTGGGCTT TGGCGGCGGA GTTCATTCTG GGTGGTCTGC TGGGCGGTAT TGTCGGCACT
CTGGCGGCAA CCCGGCTCGG CGCGCATAAA AACACCCTCA ACCGGATGTT TGCGGCGATG
GTTTTTCTGG TCGCCTTCTA TGTGATCTAC AAGAGCTCCG GCGCGATCAT TACGCGCTGA
|
|---|
| Protein sequence | MNTLFAAVGS GGLVGFTLGL LGGGGSILAT PLLLYVVGVS QPHVAIGTGA LAVSANALIN
FASHALKGNV RWRCGAVFAA LGVIGALAGS SLGKAMDGTR LLLLFGIVMV AVGVWMLRPR
KAVAAAPRPV DLRMCLTTAL VALVSGAASG FFGIGGGFLI VPGLILATGM PMINAVGTSL
MAVTAFGLAT AVNYALSGLV DWALAAEFIL GGLLGGIVGT LAATRLGAHK NTLNRMFAAM
VFLVAFYVIY KSSGAIITR
|
|---|
| |