| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1449 |
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| Symbol | rnc |
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| ID | 7386425 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1219474 |
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| End bp | 1220193 |
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| Gene Length | 720 bp |
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| Protein Length | 239 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643650833 |
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| Product | ribonuclease III |
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| Protein accession | YP_002549038 |
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| Protein GI | 222148081 |
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| COG category | [K] Transcription |
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| COG ID | [COG0571] dsRNA-specific ribonuclease |
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| TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.558128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGGCTC CCAAGGCCCT GACTGCTGAA GAACGCGAAA AAGTGGAGGC CGTGATCGGC
TACCACTTTA TTGGCAAGGA ACGGCTGGAT AAGGCGCTGA CCCATTCCAG TGCGAGGCCC
GCCAAGGGTA GCGATTATGA GCGCCTGGAA TTCCTGGGCG ACCGGGTGCT TGGCCTTTGC
GTGGCCGAGC ATTTGTTCAA GGTGTTTCGC GCTGCCACCG AAGGTGAGTT GTCGGTGCGG
CTGAACCAAT TGGTCAGCGC GGAGACCTGT GCGGCGGTGG CCGATGAAAT TCAGCTGCAT
CGCTATATCC GCACCGGTGC CGACGTCAAA AAGCTGACAG ACAAGAATAT GCTGAATGTG
CGGGCCGATG TGGTGGAAAG CCTGATTGCC GCCATTTATC TTGATGCCGG GCTGGAAGCG
GCGCGTGCCT TCGTGTTGAA GTTCTGGGCT GAGCGTGCCT CCCGGCAGGA TGCCGGTCGG
CGTGACGCAA AGACCGAGCT ACAGGAATGG GCACACGCGA AATTTGCCGT GACACCTGTC
TATCGGGTTG CGGACCGCTC TGGACCGGAT CATGATCCCA GCTTCACGGT CACGGTTGAA
ATCGGCAAGC TGGAGCCGGA AACCGGAATT GACCGGTCGA AGCGCGCCGC AGAACAGGCG
GCGGCGACCC GGTTGCTGGA AAGAGAAGGC GTGTGGACGA GATCCACCGC CTCAGATTGA
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| Protein sequence | MKAPKALTAE EREKVEAVIG YHFIGKERLD KALTHSSARP AKGSDYERLE FLGDRVLGLC
VAEHLFKVFR AATEGELSVR LNQLVSAETC AAVADEIQLH RYIRTGADVK KLTDKNMLNV
RADVVESLIA AIYLDAGLEA ARAFVLKFWA ERASRQDAGR RDAKTELQEW AHAKFAVTPV
YRVADRSGPD HDPSFTVTVE IGKLEPETGI DRSKRAAEQA AATRLLEREG VWTRSTASD
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