Gene Avi_1364 details

Gene Information

• Locus tag: Avi_1364
• Symbol: ccmF
• ID: 7389103
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 1140229
• End bp: 1142232
• Gene Length: 2004 bp
• Protein Length: 667 aa
• Translation table: 11
• GC content: 61%
• IMG OID: 643650774
• Product: cytochrome c-type biogenesis protein CcmF
• Protein accession: YP_002548980
• Protein GI: 222148023
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG1138] Cytochrome c biogenesis factor
• TIGRFAM ID: [TIGR00353] c-type cytochrome biogenesis protein CcmF

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.220377
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCATTG AGATCGGCCA TTATGCGCTG GTGCTGGCGC TGGCCGCCGC ACTCCTGCTT 
TCGGTCCTGC CGATGCTGGG GGCGCGCAGG GGCGATACAG CCATGATGCA GACGGCAGTG 
ACCGGCACCT ATGCGCTGTT TGCGCTGGTG CTGTTTGCCT TTGGTGTGCT GGCTTACGCC 
TATCTGGTCT CGGATTTCTC GCTGCTGAAT GCCTATCAAA ATTCCCACTC ACTGATGCCC 
GCCATCTATC GCTTCTCGGC GGTCTGGGGT AATCACGAGG GATCGATGAT GCTGTGGCTG 
TTGATCCTGA CGCTGTTTTC GGCGCTGGTG GCGCTGTTCG GCAGCAATCT GCCCGACCGG 
CTGAAAGCCA ATGTGCTCGG CGTTCAGGCC TGGATTTCCA CGGCCTTCAT TCTGTTCATC 
CTGATCACCT CCAATCCCTT CATCCGCCTC AATCCGGCGC CTGCCGAGGG GCAGGATCTC 
AATCCGGTTT TGCAGGACCC CGGCCTCGCC ATTCATCCGC CGCTGCTGTA TCTCGGTTAT 
GTCGGCTTTT CCGTCTGTTT TTCCTTTGCC ATTGCCGCCC TGATCGACGG GCGGATTGAT 
GCCGCTTGGG CGCGCTGGGT TCGGCCCTGG ACGCTGGCGG CCTGGACCTT CCTGACGGCG 
GGCATCGCCA TGGGCTCCTA CTGGGCCTAT TACGAGCTGG GCTGGGGCGG CTGGTGGTTC 
TGGGACCCGG TCGAAAACGC CTCCTTCATG CCCTGGCTGG CAGGTACTGC GCTGTTGCAT 
TCGGCGCTGG TGATGGAAAA GCGTGATGCC CTGAAAATCT GGACGGTGCT GCTCGCCATC 
CTCACTTTCT CGCTGTCGCT GCTTGGCACA TTCCTGGTGC GCTCCGGCGT GCTGACCTCG 
GTGCATGCCT TTGCCACCGA TCCAAGCCGG GGGATTTTCA TTCTCGCCAT CCTCATCCTG 
TTCATCGGCG GTGCATTGTT TTTGTTCATG CTGCGCGCGC CGCATTTGAA GGCGGGCGGG 
CTGTTCCAGC CGATTTCGCG CGAAGGCGCA CTCGTGTTGA ATAACCTGAT CCTGACGGTG 
TCGACCGCGA CGGTGCTGAT CGGCACGCTC TATCCGCTGC TGCTGGAAAC CCTGACCGGT 
GAGAAGATCT CGGTTGGCGC ACCCTTCTTT AACCTGACCT TCGGCCTGTT GATGATCCCG 
CTCCTCGTCG CCGTTCCGTT CGGGCCGATG CTGGCTTGGA AGCGCGGCGA TCTGCTGGGG 
GCGCTGCAAC GGCTCTATCT GGTGGCGGTG TTGGCCTTTC TGGTTGGGCT TGTGTTCTAT 
TATCTCCAGA ATGGCGGCCC GGTTCTGTCC GTGCTGGGGC TGGCCGCAGG CTTTTTCCTG 
ATGTTCGGGG CGCTGGCCGA TCTTGCTTAT CGCTCGGCTT TCGGCAAGCA GACGGCAAGC 
GTCGCCTTCC GCCGGTTGAT CGGCCTGCCG CGCTCGGCTT TCGGCACGGC GCTCGCGCAT 
TTTGGCCTCG GCGTTACTGT GCTGGGCATT GTTGCTGTCA CCACGTTTGA GAGTGAAATG 
GTGGTGGAGA TGAAGCCCGG TCAGACCGTG GAGGCCGGGG GCTTTTCCCT GACCTATGAC 
GGGCTGCGTT CTGCCAAGGG ACCGAATTAT ACCGAGGATC GTGGTCATTT CACCATCCGG 
CGCGGCGGGG TCTCCGAGGG GGATGTGTGG TCGTCGAAGC GGCTTTATAC GGCAAGGCGC 
ATGCCGACCA CCGAGGCGGG TATCCGCAGT TTCGGCTTCA GCCAGCTCTA TGTTTCGCTT 
GGCGATGCCA TGGCCGACGG CGGCATGGTG GTGCGTATTT GGTGGAAGCC TTGGATTCTC 
TGCATCTGGG GCGGGGCGCT GGTGATGATG ATCGGCGGCT TCGTCTCGCT CTCCGACCGG 
CGTTTGCGCG TCGGTGCTCC AAACCGCAAG GCAAAGGCAG TGGCGGCCAA TGGTGCCGTC 
AAGGGCCTGG AGGCGGCGGA ATGA 

 

Protein sequence

MIIEIGHYAL VLALAAALLL SVLPMLGARR GDTAMMQTAV TGTYALFALV LFAFGVLAYA 
YLVSDFSLLN AYQNSHSLMP AIYRFSAVWG NHEGSMMLWL LILTLFSALV ALFGSNLPDR 
LKANVLGVQA WISTAFILFI LITSNPFIRL NPAPAEGQDL NPVLQDPGLA IHPPLLYLGY 
VGFSVCFSFA IAALIDGRID AAWARWVRPW TLAAWTFLTA GIAMGSYWAY YELGWGGWWF 
WDPVENASFM PWLAGTALLH SALVMEKRDA LKIWTVLLAI LTFSLSLLGT FLVRSGVLTS 
VHAFATDPSR GIFILAILIL FIGGALFLFM LRAPHLKAGG LFQPISREGA LVLNNLILTV 
STATVLIGTL YPLLLETLTG EKISVGAPFF NLTFGLLMIP LLVAVPFGPM LAWKRGDLLG 
ALQRLYLVAV LAFLVGLVFY YLQNGGPVLS VLGLAAGFFL MFGALADLAY RSAFGKQTAS 
VAFRRLIGLP RSAFGTALAH FGLGVTVLGI VAVTTFESEM VVEMKPGQTV EAGGFSLTYD 
GLRSAKGPNY TEDRGHFTIR RGGVSEGDVW SSKRLYTARR MPTTEAGIRS FGFSQLYVSL 
GDAMADGGMV VRIWWKPWIL CIWGGALVMM IGGFVSLSDR RLRVGAPNRK AKAVAANGAV 
KGLEAAE