Gene Avi_1298 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1298 
Symbol 
ID7387664 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp1088907 
End bp1089614 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content57% 
IMG OID643650725 
Producttranscriptional regulator TetR family 
Protein accessionYP_002548931 
Protein GI222147974 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCATGA GCGACGAACA ACCCGCCAAG ATAAAGCCGA CCCGCGTCGG TAGGCCCCGG 
TTGGGAGCGG AGGTTGGCCG CGAGGCAATT CTCTCCAAAG CCATTCATGC TTTTGGCCGC 
CAGGGCTTTG ACGGGGTCAA TCTGCGGGAA CTGGCAAGGC AGGTCGGAGT CAATATTGCG 
CTGGCAAATT ATCACTTCGG CTCAAAAGCC GCCCTATGGG AGGCATGCCT CGAACGCATG 
AACCTGCGCG CGGCGCCCTG CATCAACGCT TTGCAGGCCA TTTCGGCGGC CCCTTTGGCT 
TATTCTCAGA GAATGGCGGA TTTCTATGCC GCCTTCATCC GCTTCAATGC CGACCTGCCG 
GATTATGGCC TGTTCATTCT CCAGGAGATG GTTCAGGAAG GCCCGCGCCA GGAACAGGTG 
AAAGCCTCGC TGATCGATCC TTTTCACGAT GTGACGGTGC CGCTGCTCTT GGAAGGAATG 
GACCTGGGAC TGGTCCACCG GCAGGATGCA TCCCTGCTGT TTTTCACCCA TTCCATCACC 
ATTTCGCACG TTCTGGCAGG CCAAGGCGCC ATGGCGTTTT TTCTAGAGGA AGAAGATCGT 
CGGGAGCAAA CATTGAAGGA TATTCTGGCA ATGATCATCC GCTCCGCAGT CGGCGTGCTG 
ACGGAGGAAT TTGAGCAGGC GATGGCATTG GCCACCAAAG TCGCATAA
 
Protein sequence
MTMSDEQPAK IKPTRVGRPR LGAEVGREAI LSKAIHAFGR QGFDGVNLRE LARQVGVNIA 
LANYHFGSKA ALWEACLERM NLRAAPCINA LQAISAAPLA YSQRMADFYA AFIRFNADLP 
DYGLFILQEM VQEGPRQEQV KASLIDPFHD VTVPLLLEGM DLGLVHRQDA SLLFFTHSIT 
ISHVLAGQGA MAFFLEEEDR REQTLKDILA MIIRSAVGVL TEEFEQAMAL ATKVA