| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1261 |
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| Symbol | |
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| ID | 7387638 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1062615 |
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| End bp | 1064393 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643650699 |
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| Product | xanthan lyase protein |
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| Protein accession | YP_002548905 |
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| Protein GI | 222147948 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTATGC GTTTCATTAT GGGTCGTCGA GTGTTTGTTG CTGGAGCGGC TAGTCTTTTT
GCGTTGAGAC CAAGTTTTGC ACAGCAAGCG ACCTATGATG TTATTGTCTA TGGAATGACC
AGCGGCGGGA TTACCGCTGC CATACAGGCA AAAGTCATGG GAAGAACCGT GGCAATTGTT
GGCGGCTGGC GTGAACGTCA TCCCGGTGGG ATGATGTCGG GCGGGCTTGG CGGCACCGAT
GTCGAGGCCG GCAGCGCCTT CGGCGGTCTG GCGCGCCATG TGATTTCCAG GATCAATCAA
GAGGCCCAGG TGGCCGACGA CCGGTTCGCC TTCGAGCCCC GGTTTGCCCA GACCGTGTTT
GAAAAACTGC TGCGCGAATA TGATATTCCG GTGTTTAAAA GCCGTGGTGT GCTGCGGGTC
GCCAAGACCG GACCCCGGAT CGATGCGATG GAAACGGTTG ACCGCCAGGT GTTTAATGGC
CGTGTCTTCA TCGACGCCAG CTATGAAGGC GACCTGATGG CCGCGTCAGG CGTTTCCTGG
ACCGTTGGTC GCGAGCCGCA GGACGGCGAC AATGTGCTGA ACGGGTTTCG CGGAACCCGG
ACGGATTCCT GGGGAGAAAA TCATAATTTC CAGCTGCATC GCCGTTTCGA GCGGGTGATC
GGTCAGGTCG GCGTCGATCC TTTCGTCACT GAGGGCGTGG CCGCCAGCGG GCTTTTGCCA
GGCATCCGTA ATTATCCTTC CCCGGAAGTT GGCGCGGGCG ACCGGGCTGT GCAGGCCTAT
AATTTCCGCA TGACCATGAC GCGCGATCCG GCCCGCCGGG TGGATCTGCC CTCGACACCC
CCGCCGGGCT TCGATCCGAC CCGTTACGAA TTGCTGTTCC GCTGGATCAA GGCGCTTGGC
GAACGCGGCC AGCTCGCGGA CGCGGAAAAC GCCGTCAAGA TGCAGTTTCT TCTGCATAAC
GATCTTGGCA ACGGCATTTT CGACATCAAC AATCGCGGTG CGGTCTCTAC CGATTACATC
GGCGGCTCCT GGGGCTATCC GCAGGCCGAT TACGGCATGC GTGAAAAGAT CTGGAAAGCC
CATGAGCGCT GGACGCGGGG CCTGTTCTAC GCGCTGCAAC ATCACAAGGA CGCGCGCATG
CCGGGCGCTC TGCGTGATGT GTTCCTTGAT TATGGACTGG ACGGCCAGCA TTATCAGGAC
CCGCATGAAA ACGACGAGGC GCATTGGCCC TATCAGCTCT ATGTGCGGGA AGCCCGTCGC
ATGGTGTCCG ACCATCAGAT GACCGGCCAC GACGTGACCG CTGCCGACGA CCAGGAATTG
CGCGACAACA ACACGATTTC CACTGGTTCC TACAAGCGTG ATAGCCACCA TACCCAGCGC
ATCGTCCGTA CCACGGTCAA CATGCTGGGT ACGCCGACGC TCAGTGTCTG GAACGAGGGC
AATTTCGAGG CTGAGGCTGG CGGCGCTGAC CGCATCTTCA CCATTCCGCT GTCGGCCATC
GTGCCGCGCC GGGCGGAATG CACCAATCTG ATGTCGATCT TCGCGCTCAG CGCGACCCAT
GAGGCCTTCG GGGCGATCCG CATGGAAATG AGCCTGATGC AAACAGGACA GTCGGCAGGT
GCCGCTGCCG CGCTCGTCGC TGTCAGCCGG GCCGATATTC AGGACGTGTC CTATGATGAG
CTGATTTCCA GCCTCTACGT CCCACCGGGC GCCAAGCCCT CGGTTCTGCC GCGCGATCCC
AACAGCCAGG CGCTGGCTTT CAACCTTCAG AGGTCGTGA
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| Protein sequence | MTMRFIMGRR VFVAGAASLF ALRPSFAQQA TYDVIVYGMT SGGITAAIQA KVMGRTVAIV
GGWRERHPGG MMSGGLGGTD VEAGSAFGGL ARHVISRINQ EAQVADDRFA FEPRFAQTVF
EKLLREYDIP VFKSRGVLRV AKTGPRIDAM ETVDRQVFNG RVFIDASYEG DLMAASGVSW
TVGREPQDGD NVLNGFRGTR TDSWGENHNF QLHRRFERVI GQVGVDPFVT EGVAASGLLP
GIRNYPSPEV GAGDRAVQAY NFRMTMTRDP ARRVDLPSTP PPGFDPTRYE LLFRWIKALG
ERGQLADAEN AVKMQFLLHN DLGNGIFDIN NRGAVSTDYI GGSWGYPQAD YGMREKIWKA
HERWTRGLFY ALQHHKDARM PGALRDVFLD YGLDGQHYQD PHENDEAHWP YQLYVREARR
MVSDHQMTGH DVTAADDQEL RDNNTISTGS YKRDSHHTQR IVRTTVNMLG TPTLSVWNEG
NFEAEAGGAD RIFTIPLSAI VPRRAECTNL MSIFALSATH EAFGAIRMEM SLMQTGQSAG
AAAALVAVSR ADIQDVSYDE LISSLYVPPG AKPSVLPRDP NSQALAFNLQ RS
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