Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_1220 |
Symbol | |
ID | 7387610 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 1033933 |
End bp | 1035084 |
Gene Length | 1152 bp |
Protein Length | 383 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643650671 |
Product | ABC transporter substrate binding protein (iron) |
Protein accession | YP_002548877 |
Protein GI | 222147920 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0614] ABC-type Fe3+-hydroxamate transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0484482 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTTTCA GAATGATCAT GCGGGCGCTC GTCGCCGTTT TGCCGTTTAT GGCCGCACCT GCTCTCGCCG CCGAGATTAC CGATGTCGCT GGCCGCACGG TGACGCTCGA CCTGCCTGCA AAGCGGGTTC TGGTCGGCGA GGCCAGGCAG ATCCACACCA TCGCGGCGCT GGCCGGGGAC AAGACCTTCG ACACTATTGT CGGCTGGCGT GATGACATGG TGAAAAAGGA CCCAGACAGC TACGCCGCCT ATGTCGAGCG CTTCCCTGAG ATCGCCAAGC TGCCGCAATT CGGCTATCTG CCGCAGGGCG GTTTCAGCCT GGAAGCAGCG ATTGCCCTGC ATCCCGATGT GATGACGCTT AATCTGGAAG TGTTACAGGC GGCGCGTGAA AGCGGGCTGG AGGAAAAAGC GGCAGCGGCG GGCATTCAGG TCGTCTATGT CGATTTCCGC CTCGATCCTG ACAAGAATAC CGAGAAATCC ATTGAAATCC TCGGCCAGAT TTTTGGCGCA GAAGACAAGG CGAAAGAGCT GATCGCCTAT CGCCGCCAGC AGATTGCAAT TGTCACCGAC CGGCTGGCCG CTGTGAAGGA CCTGAAACGA CCCAACGTCT TCATGGAACG CGCGCCGGGC AATGATGCGG AAGGCGGCTG CTGCCGCACC TTCGGCCCGG CCAATTTCGG CCAGATGATC GATATCGCCG GTGGGCATAA TATCGCCTCC GACATCATCT CCACCACCTT TGGCGAAATC AGCATCGAAC AGCTGATCGC CTCCGATCCG GCCCAGATCA TCGTCACCGG CTCCAACTGG CTGGCGGAAT CCAAGACCAA CCGTTTCGTG CATGTCGGGC GGGGTGCCGA TCCCGAAAAG GCCCGCGCCA AGCTGCAAAC CCTGATCGAG CGCACCGGCT TTGACGGACT TGCCGCCGTG CGCAATCGCC AGGTTCATGC CGCGTGGCAT CAGTTCTACG GCGTACCCTA TGAATTTGTT CCTATCCAGC AATTTGCCAA ATGGTTCCAC CCGGAGCTGT TCGCCGATCT TGACCCTGAC CGGACCTTCC GGGAATTTCA CCAGAAATTC CTGCCAGTCG CCTATAAGCC GGGCTATTTC GTCTCAATGA ACCCGTCGGA CGACGAAAAA GGATCAAACT GA
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Protein sequence | MTFRMIMRAL VAVLPFMAAP ALAAEITDVA GRTVTLDLPA KRVLVGEARQ IHTIAALAGD KTFDTIVGWR DDMVKKDPDS YAAYVERFPE IAKLPQFGYL PQGGFSLEAA IALHPDVMTL NLEVLQAARE SGLEEKAAAA GIQVVYVDFR LDPDKNTEKS IEILGQIFGA EDKAKELIAY RRQQIAIVTD RLAAVKDLKR PNVFMERAPG NDAEGGCCRT FGPANFGQMI DIAGGHNIAS DIISTTFGEI SIEQLIASDP AQIIVTGSNW LAESKTNRFV HVGRGADPEK ARAKLQTLIE RTGFDGLAAV RNRQVHAAWH QFYGVPYEFV PIQQFAKWFH PELFADLDPD RTFREFHQKF LPVAYKPGYF VSMNPSDDEK GSN
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