| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1189 |
|---|
| Symbol | |
|---|
| ID | 7386241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 1005114 |
|---|
| End bp | 1005590 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643650647 |
|---|
| Product | transcriptional regulator MarR family |
|---|
| Protein accession | YP_002548853 |
|---|
| Protein GI | 222147896 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1846] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.622384 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCTT GCAATGCCCA AAGGACAGGT GAAATGGACA AGACGGATCT GGTGCTGGAC
AAGCAGCTGT GCTTTGCGCT TTACGGCGCA TCGCTGGCAC TGACGCGCAC CTATAAGCCG
CTGCTGGAGC CGCTTGGCCT GACCTATCCG CAATATCTTG TGATGATGGT GCTGTGGGAA
ACCGACCATT TGGCGGTCAA GGCGCTGGGG GAGCGGTTGG GGCTGGACAG CGGCACGCTG
TCGCCGCTGT TGAAGCGGCT GGAACAGACG GGCTACGTCA CCCGCCAACG CCAAAGCCAG
GATGAGCGAC AGGTGACCGT TTCGCTCACC GCCACAGGCG CTGCCCTACA GGATAAGGCT
CTCGGCGTGA TGGCGGCCAT CGGCTCGGCG ACTGGCTGTA GCCTGGAAGA AATCGCGGCG
CTACGCGATC AATTGCAGGA TTTGCGCGGC AAGCTGAATG CGGGTGTTTG TCAGTAA
|
|---|
| Protein sequence | MAACNAQRTG EMDKTDLVLD KQLCFALYGA SLALTRTYKP LLEPLGLTYP QYLVMMVLWE
TDHLAVKALG ERLGLDSGTL SPLLKRLEQT GYVTRQRQSQ DERQVTVSLT ATGAALQDKA
LGVMAAIGSA TGCSLEEIAA LRDQLQDLRG KLNAGVCQ
|
|---|
| |