Gene Avi_1140 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_1140 
Symbol 
ID7386206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp964066 
End bp965355 
Gene Length1290 bp 
Protein Length429 aa 
Translation table11 
GC content61% 
IMG OID643650612 
Producthypothetical protein 
Protein accessionYP_002548818 
Protein GI222147861 
COG category[S] Function unknown 
COG ID[COG2898] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTGAATG CATTGGAAAC CGACGTTTCA ATCAAGCCCG GACGATTTTT CCTGGTTGCC 
GGGATAGGTC TTGGCTGGCA TGCGGCCAGC AAGCTCTTGC GCCTTGTGTT GGCGCTTGGC
CTTGCGGCTT TGTCGCTGCT GTCGATTGAA TTCCTGCTGG AGCCCCTGGC GGAGCTTGGC
CTCGTTTACA AACTGCATCA GGATATTGGC GGCGCGAGCT TAGCGACGCT GTCATTGCTG
GGTGCCATCG CGGCTGGCCG TGTTGTTCAG CAGCAGATCA GGCCGGTTCG GGCGGGTGCA
TCACCTGCTC ATACACAATT GGCTGGGCGC ATCGTGCGGG AAAATTCCCG GGCGGCGGCA
GGCCTGGTGG CGCTCGGCGA TAAGCAGGTG CTGTTTTCCA ATGAGGGTGA TGCTTTCCTG
ATGTATGCAC GCCGCGGTCG TCGGTTCGTC GTGCTGTTCG ACCCGGTCGG ACCACGGGCT
GCCTGGCCGC AGCTGGTGAC GAAATTGCTG AAAGAGGCAA AGGCTTGCGG CTGCCGCGTT
GCCTTCTACC AGGTCTCCCC GGACTTTCTG CCTGTTGCGG CGGATGCGGG CCTGCGGCTG
TTCAAGCTGG GCGATCAGGC GATTGTCGAT CTGCACCGTT TCGACCTGAA GGGTGGCGAC
TGGCTGAAAC TGCGCCGCTC GATCAACCGC GCCGAGCGCG ACGGACTGGA ATTTGCCATT
GTGCCGCCAG CCGAAGTAGC GGGATTGCTG GATGAACTGG CTTACGTTTC GGATGTCTGG
CTGGCCCATC ACAAGGCCGG AGAAAAGGGC TTTTCGCTCG GCACCTTCCA GCGCTGTTAT
CTCTGCGCCC ATCCGGTTGC CATCATTCGC CTTGAAGGCC GGATTGTCGC CTTTGCCAAT
ATTCTGACCA CCGAGACAAA ACAGGACGCC TTCATCGACC TGATGCGGCA TCTGCCCGGC
ACGCATCGCG GCATGATGGA CCTGCTGTTC GTGAAGATCA TGCTGCATCT GAAAGCGGAA
GGCTATCGCC AGCTTGACAT GGGCATGGCG CCGCTGTCCG GCCTGTCGGA CCGAGCGTCC
GCCCCGCTTT GGCACCGCCT TGGCCGTCTT GTCTATGAGA ATGGCGAGCG GCTCTATAAT
TTCAAAGGCG TCCACGCCTT CAAGGCTAAG TTCGATCCCG ACTGGCAACC CCGCTACCTC
GCCGTCAGCG ACCGGCGTCA AGCATTGCCC GCCGTGGTCG ATACCGCGCT GCTGATCAGC
GGCGGGATCA AAAAACTGGT GCGGCGATAG
 
Protein sequence
MVNALETDVS IKPGRFFLVA GIGLGWHAAS KLLRLVLALG LAALSLLSIE FLLEPLAELG 
LVYKLHQDIG GASLATLSLL GAIAAGRVVQ QQIRPVRAGA SPAHTQLAGR IVRENSRAAA
GLVALGDKQV LFSNEGDAFL MYARRGRRFV VLFDPVGPRA AWPQLVTKLL KEAKACGCRV
AFYQVSPDFL PVAADAGLRL FKLGDQAIVD LHRFDLKGGD WLKLRRSINR AERDGLEFAI
VPPAEVAGLL DELAYVSDVW LAHHKAGEKG FSLGTFQRCY LCAHPVAIIR LEGRIVAFAN
ILTTETKQDA FIDLMRHLPG THRGMMDLLF VKIMLHLKAE GYRQLDMGMA PLSGLSDRAS
APLWHRLGRL VYENGERLYN FKGVHAFKAK FDPDWQPRYL AVSDRRQALP AVVDTALLIS
GGIKKLVRR