| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0992 |
|---|
| Symbol | |
|---|
| ID | 7387091 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 842094 |
|---|
| End bp | 842885 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643650499 |
|---|
| Product | hemolysin A |
|---|
| Protein accession | YP_002548707 |
|---|
| Protein GI | 222147750 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1189] Predicted rRNA methylase |
|---|
| TIGRFAM ID | [TIGR00478] hemolysin TlyA family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAT CGCCAAGCCC CCAATCGTTG GAACCCCAAC GTCTCGACCA GTTGCTGGTT
GCTCTCAATC TGTTCGCCAG CCGCTCGCGC GCCCGCGACG CCGTGCAGCG TGGTGGCGTC
AAGGTGAATG GCCGCACCGT GACAAAGCCA AGCTTGACCT TCTCCCCTGA TGTGACGATC
GAAATCGACG ATCCGGCCCA GGATTACGTG TCGCGCGCCG CGCTGAAGCT AGTGGCTGGT
CTCGATCACT TCAAGCTCGA CCCTTCCGGC CATATCTGTC TCGATGTCGG TGCGTCCACC
GGCGGCTTTA CCGAAGTGCT GCTGCATCGC GGCGCAGCGC ATGTGGTTGC CATTGATGTC
GGCCATGAAC AGTTTCATCC CCGGTTGGAA AGCGATCCCC GCACTACCAA TATCGAAGGG
CTGAATGCGC GCTATCTGGA GCCGGAGGAT ATTGGCAATC AAGAGTTTAC CTTCCTGGTC
TCTGACGTCT CCTTCATTTC GCTGAAACTG GCCCTGGTGC CTGCTCTCGA AATGGCCGAG
CCGGGCAGCC ATTGCCTGCT GCTGGTCAAG CCGCAATTTG AGGCGGGTCG CGAGGCCATC
AGCAAGGCAG GCCTCCTCAA GGAACCGGAA ACCGCGCCGC TGGTGGCTGC CGAGCTGGAA
CGTTGGTTAA GCGAAGACAT GGGCTGGACA AGCCTTGGCC TGATCCCTTC GCCGATTGCC
GGTGGCGATG GCAATGTGGA ATTCCTGCTG GCAGGGCGAA AGCCGGAAGA ACAGCCTGAG
GATGCAGAAT GA
|
|---|
| Protein sequence | MTQSPSPQSL EPQRLDQLLV ALNLFASRSR ARDAVQRGGV KVNGRTVTKP SLTFSPDVTI
EIDDPAQDYV SRAALKLVAG LDHFKLDPSG HICLDVGAST GGFTEVLLHR GAAHVVAIDV
GHEQFHPRLE SDPRTTNIEG LNARYLEPED IGNQEFTFLV SDVSFISLKL ALVPALEMAE
PGSHCLLLVK PQFEAGREAI SKAGLLKEPE TAPLVAAELE RWLSEDMGWT SLGLIPSPIA
GGDGNVEFLL AGRKPEEQPE DAE
|
|---|
| |