Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0886 |
Symbol | intD |
ID | 7387693 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | + |
Start bp | 748068 |
End bp | 749117 |
Gene Length | 1050 bp |
Protein Length | 349 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643650420 |
Product | phage-related integrase |
Protein accession | YP_002548629 |
Protein GI | 222147672 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.280114 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTATGGGA GCGGGATCGT GCGCGTAAAG CTTAAGGGGC TGAATAAGGT CAAAAAGAAG CTGGCAGACG GAACGCCCGT TACATACTTC TACGCCTGGA AAGGCGGCCC GCCGTTACCA GGAAAGCCGG GTGATCCTGA ATTTATGGCC GCATATAATG CGGCCATTTC TCGCAAGGTG GAGCCTCAGG CTGGAACATT GCAATCGATC CTGAATGCAT TCCAGGTGAG TTCCGATTGG GATGATTTGG CCCCGCGCAC GAAGTCGGAC TATGTGAAGC TGATCAAGGT GATCGAAAAA GAGTTCGGTA CATTTCCAAT TTCCGGCCTC AAGAACAGAC GTGCAAAGTC AATCTTTCTC TCATGGCGGG ATGAGCGGGC AAGAGCGTCT CGCCGTCAAG CTGATTATGG TTGGCAAGTT CTGGCGCGTA TTCTCTCATG GGCGCTTGGT CGCGGTCTCA TTGAGGCGAA CCCCTGTGAA AAGGGTGGGC GGCTCTATCA GGGTTCGCGG GCCGAATTTG TTTGGACGGG TGACGATGAA GCCAATTTCC TTGCATCTGC ACCGCCGCAC CTTCATTTGG CGCTAATACT TGCTCTTTGG ACTGGGCAAA GGCAGGGCGA CCTATTGGCC CTGACGTGGC CGCAATACGA TGGTGAGCGG ATTCGGCTTA AGCAAGGAAA GACCGGGGCG CGGGTGGTGA TACCTGTCGG CGGGCCGCTT AAGGCAATGC TTGACCCGAT CCGGCAAAAG GTGGGCCATG TGCTTCTTAC GCTTGATGGT ACGCCATGGA CTTCGGGCGG CTTTTCATCG TCGTGGCGCA AAGCCTGCGC GGCGGCTGGC GTCGTCGGTG TAACGTTCAA CGACCTACGA GGAACAGCCG TCACGCGCCT TGCGCTTGCC GGATGCACGG AAGCTGAAAT TGCGACTATC AGCGGCCACA GCCTGCGCGA CGTTCGCTCA ATCCTTGATT CCAACTACCT GAACAGAGAC CCAGAGCTTG GCGAAAACGC TATTCGGAAG CTCGAAGGGA GAACAAAGTT TCCCAACTGA
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Protein sequence | MYGSGIVRVK LKGLNKVKKK LADGTPVTYF YAWKGGPPLP GKPGDPEFMA AYNAAISRKV EPQAGTLQSI LNAFQVSSDW DDLAPRTKSD YVKLIKVIEK EFGTFPISGL KNRRAKSIFL SWRDERARAS RRQADYGWQV LARILSWALG RGLIEANPCE KGGRLYQGSR AEFVWTGDDE ANFLASAPPH LHLALILALW TGQRQGDLLA LTWPQYDGER IRLKQGKTGA RVVIPVGGPL KAMLDPIRQK VGHVLLTLDG TPWTSGGFSS SWRKACAAAG VVGVTFNDLR GTAVTRLALA GCTEAEIATI SGHSLRDVRS ILDSNYLNRD PELGENAIRK LEGRTKFPN
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