Gene Avi_0826 details

Gene Information

• Locus tag: Avi_0826
• ID: 7386308
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: -
• Start bp: 706223
• End bp: 708178
• Gene Length: 1956 bp
• Protein Length: 651 aa
• Translation table: 11
• GC content: 60%
• IMG OID: 643650379
• Product: AsmA family protein
• Protein accession: YP_002548589
• Protein GI: 222147632
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG2982] Uncharacterized protein involved in outer membrane biogenesis

Plasmid Coverage information

• Num covering plasmid clones: 5
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGCTGTATC GGAACGGCGG CAGTGGACTT ATTCTTCGCG CCGGATGTGA AAGGCCTGAT 
GTGACGCTCG GTTCAAAACG GAAATGGTCA GGGCCCGGGC GTTGGCGCGG TCCCCGGCTG 
GCCCGCACAG CGATTGCCGT CATCGCGGTT GCACTTTGCG TTTTTGTCGC ATCCCGGCTG 
GCGGCACCCT ATATCGTGTC CAGCAGCCTG GTGCGGGGCA GCATCGAAAA AGCCATCAGC 
CGCTGGAGCG GCCATGACGT AGAGATCGCA GGAACGCCCA GCCTGCAATT CTGGCCAGAG 
CCGCGCATTA CCCTGCCCGA TGTTACCATT ACCGACCGAG ATCCCGCTCA ATCTGGTGGG 
ACGGCTGGCA AGGCCAAGCG CGTTCTTGCC CATATCGACG TGCTGTCGGC TTCGTTCGGA 
CTGGTCCATG CAGCCATGGG CAATCCGGTC TTTGACGATT TCCATCTCAG CCGGCCCCAC 
ATCTACATGC GGCGCAACAC GCAAGGCCAT CTCGATTGGG CGGGACAAGG CCTGCTCTCC 
GATGCCATTT CTCATGTCCA GGAGAGCATC AAGGGCGGAC AAAGCCTGGA CAAGGCCTAT 
GATGCCCGGA TCGGATCGAT CACCATTGAA AACGGCCGGA TCGACATCGA GGATCAACCG 
TTACAGCGCC GGGTGGTGAT CGACAGCATC TTTTCCCATC TGTTCTGGCC AGTGATGTCG 
GCACCCGCGA TCGGCAATGC CAATATGATC ATCGGCGGTG TTGCCACCCA GCTGGATTTT 
GCCTCCACCC AGCCCTTGAT CCTGCTGGGC GGCGGGGTTG GCCAGGCGGA ATTTTCCCTG 
ACCGCACCGA CCCTGAAGGG TAGTTTCAGC GGCAAGACAG GGCTTGCGCC CGCCCGTTTT 
GCCTCCGGCC AGCTCAGCTT AACGATTTCC AACGTGCCGG GGCTTCTGGC TTGGACAGGC 
GCGACGCTAC CGGGCACGGA AGCGCTGCAC ACAGTCTCCG TCAACGCCAC AGTGACGGCG 
GAGACCGACA AGGTGAGGCT GGACAGCTTG TCCTTTACGG CCAACGATAC CAGTGCAACC 
GGACTGATGG AAATGGCCCA GGCGAAAAGC GGCAAGCCGA AGCTGAGTGG CACACTGGCC 
TTTGAGCAGA TGGATATTCC GACCTTTCTT GGTGCCTTCT CGCTCTCGGC GCCCGACACC 
AGTCATAATA ACGGGAAAAG TGGACTGCTG GACTGGCTAG AATTCGACCT TACGCTTTCG 
GCCCGCAAGG CGACCTATGC GCCCTTCACA CTCACCGATA TGGGTGCCAG CATTCTGGCC 
ACCGATGGCA CCGTCGTGTT CGATATTGCC GATAGCACGC TGGCCGATGG AACATTGATT 
GCCCATCTCG AAGGCCGCAA TGGCGGCTTC GACGAAGGCG GCCATCTGGA CCTGTCGCTG 
ACCAATGCCG ATCTTTCCGA TATCGAAGGC AAACTGGCGC TGAATGGCCC CCTGCCGCTG 
GGGCCCGGCT CCCTGACGAT CTCGGCCGCG ACCAACCGGG CACTGTGGGA GACCCGTGCA 
GCGGATATTA CCGGCACATT GGACCTCAGT GCCGGACCGG GCCGGATCAC CGGCGTCAAC 
CCGGAGGGCA TCCGGCGCAA GGCGGCGGAA CAGAAGTTTT TCCGATTGCA GGATGCTGGC 
ACGGGTGAAT TGCCATTTGA CAATCTGACT GTGTCAGCAA CGCTTGATGA TGGCAGTATC 
AATATTGGCA AGGGTGATCT GCTGGGCAGT GTGCAGTCCT CCTCTTTCTC CGGTGTCATT 
CCCTATAATT TCAAGGGATT GGCCCTCTCG ACGGAAGTCC GCCCCGGCAC TGCTTATGCC 
AACAGTGCCA GTGATGTCGC TGGCAATTTT GCACCGCTGC GGATGTTTAT CGGCGGTTCC 
TGGCCGGATC TGATCCTGTC GCCAGCCCGG CCTTGA 

 

Protein sequence

MLYRNGGSGL ILRAGCERPD VTLGSKRKWS GPGRWRGPRL ARTAIAVIAV ALCVFVASRL 
AAPYIVSSSL VRGSIEKAIS RWSGHDVEIA GTPSLQFWPE PRITLPDVTI TDRDPAQSGG 
TAGKAKRVLA HIDVLSASFG LVHAAMGNPV FDDFHLSRPH IYMRRNTQGH LDWAGQGLLS 
DAISHVQESI KGGQSLDKAY DARIGSITIE NGRIDIEDQP LQRRVVIDSI FSHLFWPVMS 
APAIGNANMI IGGVATQLDF ASTQPLILLG GGVGQAEFSL TAPTLKGSFS GKTGLAPARF 
ASGQLSLTIS NVPGLLAWTG ATLPGTEALH TVSVNATVTA ETDKVRLDSL SFTANDTSAT 
GLMEMAQAKS GKPKLSGTLA FEQMDIPTFL GAFSLSAPDT SHNNGKSGLL DWLEFDLTLS 
ARKATYAPFT LTDMGASILA TDGTVVFDIA DSTLADGTLI AHLEGRNGGF DEGGHLDLSL 
TNADLSDIEG KLALNGPLPL GPGSLTISAA TNRALWETRA ADITGTLDLS AGPGRITGVN 
PEGIRRKAAE QKFFRLQDAG TGELPFDNLT VSATLDDGSI NIGKGDLLGS VQSSSFSGVI 
PYNFKGLALS TEVRPGTAYA NSASDVAGNF APLRMFIGGS WPDLILSPAR P