| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0688 |
|---|
| Symbol | |
|---|
| ID | 7388720 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 591722 |
|---|
| End bp | 593380 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643650284 |
|---|
| Product | transposase |
|---|
| Protein accession | YP_002548494 |
|---|
| Protein GI | 222147537 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3436] Transposase and inactivated derivatives |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTGA AACCTGACGC TCTTCCCGAA GACCTTGCCA GCGCCTATTT GGCGCTACTG
GCCAATCACG ATGTCGTCGT CAACGAGCGG AACATTGCAG TCGCGGAGGC TGCCAATGCG
CAAGCCATGC TATCTGATCG CGATGCGCGG ATCGCCAGTC TTGAATTGCG GATCGACAAG
CTCAAGCGCG AACTACACGG CCAGAGCAGT GAACGCTCAG CGCGGCTGAT TGATCAGTTG
GAATTGCAGC TCGAAGAGCT GGTGACGGCA GCGAGCGAAG ATGAAGTTGC AGCGCAGGCA
GCGGCGGCCA AAACGGCAAA CGTGCGTCCG TTTGTGCGCA AGCGTCCAGT TCGCAAGCCT
TGGCCGGACG ATGTCGAGCG CGAGCGCGTG GTCATTGCCC CTCCGAGCAC CTGCGCGTGT
TGCGGCGGGT CGCGCCTGTC GAAACTGGGT GAGGACGTTA CCGAGACGCT GGAAGAAATT
CCGCGCCGCT TCAAGGTCAT CGAGACGGTG CGCGAGAAGT TCACCTGCCG TGACTGTGAG
GCCATCAGCC AGTCGCCAGC CCCTTTCCAT GCCACCCCGC GTGGCTTCAT AGGACCCCAA
CTGCTGGCGA CGATCCTGTT CGACAAGTTC GGCATGCATA GCCCGCTCAA TCGGCAGAGT
ACCCGGTTCA AATGCGAGGG GATCGATCTG TCGACCTCAA CGCTTGGCGA TCAGGTCGGG
CTTGGAACAT CGGCTCTCAT GCCACTGTTC GATCTCATCG AGGCCCAGGT CTTTGCGGCT
GAGCGCCTCC ACGGTGACGA CACCACCATT CCCATCTGGG GCAAAAGCAA ATGCACAACT
GGGCGCATTT GGACCTATGT GCGTGATGAT CTGCCCTTCA AGGGGGATGC ACCCCCGGCT
GCGGTTTATT ACGCCTCGAG CAACCGCCGA GGCGAGCATC CGCAAAGACA TCTGGCCAGA
TATGGCGGCA TTCTGCAGAC GGATTGTTAC AACGGGTTCG AGCCGATATC GATTGCCGCA
CAGAAAGACG TGCCGATCAC GTTTGCTTTT TGCCATGCGC ATGCACGACG AAAATTCTTT
GAGTTGGCCG ATCTCGAAAA AAGTGCGCGC GACAGCAAGC GCAATGGCAG GCCGATCTCC
CCGATCGCGC TTGAGGCCGT CAAACGCTTC GACGCGCTGT TTGACATCGA GCGGCAGATC
AATGGGCTGA GCGCTGAAGA GCGATTGGCG GTGCGACAGC ACAAAAGCAG GCCGCTGTTC
GACGACATGC ATGCGTGGCT GCAACGCGAG CGCGCCACGC TCAGCAGATC ATCCGACCTC
GTCAAAGCCA TGGACTATAT GCTCAAGCGC TGGGACGGCT TTGCGCTATT CCTGGAAGAC
GGCCGAATTT GCCTCACAAA TAATGCCGCC GAGCGCGCTT TAAGAGGTAT TGCATTGGGA
CGCCGCAACT GGACCTTCGC CGGGTCCCAG CGTGGGGCCG AGCGCACTGC CGTCATGCTC
ACACTCATCA CAACCTGCCG TCTTAATGAT GTCGACCCAA AGGCATGGCT TGCCGATGTG
TTCACCCGCA TCGCCGATCT CCCCGTCACC CGCCTGCACG AACTGCTGCC TTGGCAATGG
AAGTTGCGCA AAGGGATAGC TATAGCGCCG GTCGGGTGA
|
|---|
| Protein sequence | MALKPDALPE DLASAYLALL ANHDVVVNER NIAVAEAANA QAMLSDRDAR IASLELRIDK
LKRELHGQSS ERSARLIDQL ELQLEELVTA ASEDEVAAQA AAAKTANVRP FVRKRPVRKP
WPDDVERERV VIAPPSTCAC CGGSRLSKLG EDVTETLEEI PRRFKVIETV REKFTCRDCE
AISQSPAPFH ATPRGFIGPQ LLATILFDKF GMHSPLNRQS TRFKCEGIDL STSTLGDQVG
LGTSALMPLF DLIEAQVFAA ERLHGDDTTI PIWGKSKCTT GRIWTYVRDD LPFKGDAPPA
AVYYASSNRR GEHPQRHLAR YGGILQTDCY NGFEPISIAA QKDVPITFAF CHAHARRKFF
ELADLEKSAR DSKRNGRPIS PIALEAVKRF DALFDIERQI NGLSAEERLA VRQHKSRPLF
DDMHAWLQRE RATLSRSSDL VKAMDYMLKR WDGFALFLED GRICLTNNAA ERALRGIALG
RRNWTFAGSQ RGAERTAVML TLITTCRLND VDPKAWLADV FTRIADLPVT RLHELLPWQW
KLRKGIAIAP VG
|
|---|
| |