Gene Avi_0658 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0658 
Symbol 
ID7388699 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand+ 
Start bp569268 
End bp569900 
Gene Length633 bp 
Protein Length210 aa 
Translation table11 
GC content57% 
IMG OID643650264 
Productphage integrase protein 
Protein accessionYP_002548474 
Protein GI222147517 
COG category[L] Replication, recombination and repair 
COG ID[COG4973] Site-specific recombinase XerC 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTATCT CACAATATGA TCCTGCTGCA CTGGGTCGAC CGGCTTGGAA CGCAGGCAAA 
CAAGTTGGCG TCAAGAAGCC GCTGAAGCAG CGCCAGATCT GGGCAGTGCG TTTCTTTCTC 
GACCGGGAAG GAAGGATGAG AGATCGTGCG CTTTTCGATC TTGCCATCGA CAGCAAGCTC 
CGCGGCTGCG ATTTGGTAAA AATAAAAATC GGGGCTCTCG TCACGGGTCA CGAAATTCGA 
ACTCGTGCGA TGGTCGTCCA GCAAAAGACT GGACGCCCTG TGCAGTTCGA GATTACGACC 
GAGGTCCGGG CTAGTCTGCT TGCTTGGCTT CAGCGAAGGG GAGGAACAGT CGATGACTAT 
GCCTTTCCTA GTCGCGTCGA CCACACCGAT CATCTCAGCA CTCGGCAGTA CGCCCGACTT 
GTCGATGAGT GGGTGACGGC GATTGGGCTG CGTCGGGAGG ATTACGGCAC GCATTCCCTG 
CGGCGAACGA AGGCTGCCAT GATCTATAAG GCCACCGGCA ACCTTCGAGC GATCCAGATC 
CTGCTTGGCC ATACCAAGAT CGAGAACACC GTCAGGTATC TCGGCGTCGA CATTGAGGAT 
ACACTGGAAC TGGCCGAGCG GACCGAGATC TGA
 
Protein sequence
MGISQYDPAA LGRPAWNAGK QVGVKKPLKQ RQIWAVRFFL DREGRMRDRA LFDLAIDSKL 
RGCDLVKIKI GALVTGHEIR TRAMVVQQKT GRPVQFEITT EVRASLLAWL QRRGGTVDDY 
AFPSRVDHTD HLSTRQYARL VDEWVTAIGL RREDYGTHSL RRTKAAMIYK ATGNLRAIQI 
LLGHTKIENT VRYLGVDIED TLELAERTEI