Gene Avi_0607 details

Gene Information

• Locus tag: Avi_0607
• ID: 7388996
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 524050
• End bp: 524763
• Gene Length: 714 bp
• Protein Length: 237 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 643650224
• Product: ABC transporter nucleotide binding/ATPase protein
• Protein accession: YP_002548436
• Protein GI: 222147479
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGTCGC TTGCTCTCGA GGATGTCGCG GTCCGCTATA TTGGTTTGCC GAAGCCGGTT 
TTAAACATTG GTCGGCTTGA GGTTGCCGCC GGGGCTCAAC TGGCGATCAC CGGCGGTTCC 
GGTTCGGGCA AAAGCACGCT TGTTAATGTG ATGACGGGGT TGGAGCGCCT GCGCCAAGGC 
CAAGCCCGCT GGAACGGCAC CGACCTGTCG GGTCTGTCAG AGGGCGCGCG CGACCGGTTC 
CGCGCGGCGC ATATCGGTCT TGTCATGCAG GAATTTCATT TGTTCTCCGG CCTGTCGGCC 
ATCGACAATA TCCTGCTGCC AGCCCGGCTG GCGCGGGTGG GGACGCCTGC TTGCGTCAAG 
CGCGCCCACG ACTTGATGCA GCGTTTCGGC CTTGGGCGTC CTGATCAGGC TATTGAAACC 
ATGTCGCGTG GCGAAATGCA GCGGGTGGCG GTGGCCCGGG CGCTGTTGAG AAAACCCGGC 
GTGATCATTG CCGACGAGCC GACCGCAAGC CTCGACGCCG AGGCGGGGGC TGCGGTTGCC 
GATCTTCTTC TGGATCTTGC GAAAAGTGAG GGCAGCACCT TGATCGTCGT TTCCCACGAT 
GCCCGTCTGG TGGAGCGCCT GCCCCGCAGG ATCGAATTGA AAAACGGCGA AATCGTCCAT 
GACACAGGTG ACTTTGTTGG GCATCAGGCC GGCCCTCGGG AAGGTGACGC ATGA 

 

Protein sequence

MMSLALEDVA VRYIGLPKPV LNIGRLEVAA GAQLAITGGS GSGKSTLVNV MTGLERLRQG 
QARWNGTDLS GLSEGARDRF RAAHIGLVMQ EFHLFSGLSA IDNILLPARL ARVGTPACVK 
RAHDLMQRFG LGRPDQAIET MSRGEMQRVA VARALLRKPG VIIADEPTAS LDAEAGAAVA 
DLLLDLAKSE GSTLIVVSHD ARLVERLPRR IELKNGEIVH DTGDFVGHQA GPREGDA