| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0588 |
|---|
| Symbol | |
|---|
| ID | 7388982 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 504978 |
|---|
| End bp | 505547 |
|---|
| Gene Length | 570 bp |
|---|
| Protein Length | 189 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 643650210 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002548422 |
|---|
| Protein GI | 222147465 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2340] Uncharacterized protein with SCP/PR1 domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCAGG CCGTCTCAAC GCCAAAGGCT GGCCGCCGCG AGCTTTTGGC GCTGGGCGGC
CTTGGGCTTG CAGCCCTGCT GAGCGGTTGC GCCACGCCTG CGCTCAAGCC TTCCGCCCCG
TCAGATGTTG AGGACGAGAC CGCTGCCTTT CTGCCGATGG TCAACGCATT ACGCCAGAAG
AACGGCAAGC CGGTGCTGGT TAGCGATCCG CAGGCCGCCA AGGCCGCGAT GTTCCAGGCC
AATCGCATGG CCCAGGCTGA GAAAATGGCA CATCTGATTG GTGTAGGCGA CAGTTTCGGG
GCGCGGATGC GCTCAGGAAA TGTCCAGCTT CCAGCGGCTG AAAATGTCGC CATGTTGCAG
CAGACGGCAG ATGCCGCCAT GCAGGCCTGG ATCAACTCGT CCCATCATCT GGAAAACATG
CTCGGCCCCT ATCACGGGCT GGGTGTGGCC GTGGCGCGCA TACCGTCACG CGGCAACAAG
CCGTATTGGG CCATGGTTCT GTCCGGCACG CCACGTCCAG AGAGCGAAAT GGGACCGCCG
CCAACTGGCA TTCGCTTAAG AATCGGGTGA
|
|---|
| Protein sequence | MPQAVSTPKA GRRELLALGG LGLAALLSGC ATPALKPSAP SDVEDETAAF LPMVNALRQK
NGKPVLVSDP QAAKAAMFQA NRMAQAEKMA HLIGVGDSFG ARMRSGNVQL PAAENVAMLQ
QTADAAMQAW INSSHHLENM LGPYHGLGVA VARIPSRGNK PYWAMVLSGT PRPESEMGPP
PTGIRLRIG
|
|---|
| |