Gene Avi_0470 details

Gene Information

• Locus tag: Avi_0470
• Symbol: flgE
• ID: 7388473
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011989
• Strand: +
• Start bp: 398422
• End bp: 399657
• Gene Length: 1236 bp
• Protein Length: 411 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643650118
• Product: flagellar hook protein FlgE
• Protein accession: YP_002548332
• Protein GI: 222147375
• COG category: [N] Cell motility
• COG ID: [COG1749] Flagellar hook protein FlgE
• TIGRFAM ID: [TIGR03506] fagellar hook-basal body proteins

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCTTG CATCTGCAAT GAACTCATCG GTATCGGGGC TGACGGCGCA GTCCAATAAA 
CTCACCTCCA TCGGGGATAA TATTTCCAAT ACGAGCACGA CCGGCTACAA AGGCACGGAG 
ACTGCGTTTT CCAGTTTGGT GAATGGCGGA ACGACTTCGA CGACCACCCA AACAGTGTCC 
CAGTCGGGTG ATCTCGAGTC GACCTCGTCG GAGACGGATC TGGCGATCGA CGGTGACGGA 
TATTTCGTTG TGCAGGATGA TGAGGGTGAT GTTTTCCTGA CCCGTCAGGG TGACTTCGAG 
ATTGACGAGG ATGGTTACCT TGTGAACTCA TCCGGCTATA CGCTGCTGGG CTACTCCTAC 
GACAACGGCG AACCGGCTTC TGTCATCAAT GGTTTCGACG GTCTTGAACC GGTGAAAATC 
GACACCAGCG AGGTCACGGC ATCGGCCACG ACCACCGGCG AAGTCAGCGG CAATCTGGAA 
AGCGATGAAG AGGTGGTTTC TGGCGATACA CCGTCTTCGA ACTCGGCGGA TGCCACCTTC 
ACGGCGAAGT CGTCGATCGT CACGTATGAC GAACAAGGTG CCTCAACCCA ATACGACATT 
TATTTTACCA AGACCGATGA CGATGAGTGG GAAGTTTCGA TCTACCGCAA TGATGAGGCT 
AATGACGATG ATGACGGAAC CAGCTTCCCC TATGATAATG GTGAGCTAGG CTCGACAACA 
TTGACCTTCG ATAGCGCAGG GGAGTTGGAA GACGGCAGCA CGAGCACCCT GTCCTTCACC 
GATTCCGAGA CAGGCCTTAC GATTGATCTC GATTTTTCGG ATATCACCCA GACGGCCACC 
TCCACCAGCA TAGAGGGTAG CGCAAACGGC AGTGCTGCCA GCAGCTCGTC CGACTACACG 
ATCGGCAGTG ATGGCGTTAT CAGCACCGTA TCTTCCGACG GAACCACGAC AGATACCTAC 
AAGATTGCGC TTGCCACCGT TGCCAGCCCT GACAACCTCG AGGAGGTTGG CGGCACTGCC 
TATAAGGTGG ATGCCGATTC CGGTACCGTC GTCGTCGGCT TTGCTGGCAC AGGCAGCTTC 
GGCACCATCG AATCCAGCAC GCTGGAAAGT TCAAACGTCG ACCTTGCGTC TGAACTGTCG 
GACATGATCG CTGCTCAGCG CGCCTATAGC GCTAACTCCA AGGTGTTCCA GACGGCGGCC 
GACATGCTCG ACACCGTCAT CAACATGGTC CGGTAA 

 

Protein sequence

MSLASAMNSS VSGLTAQSNK LTSIGDNISN TSTTGYKGTE TAFSSLVNGG TTSTTTQTVS 
QSGDLESTSS ETDLAIDGDG YFVVQDDEGD VFLTRQGDFE IDEDGYLVNS SGYTLLGYSY 
DNGEPASVIN GFDGLEPVKI DTSEVTASAT TTGEVSGNLE SDEEVVSGDT PSSNSADATF 
TAKSSIVTYD EQGASTQYDI YFTKTDDDEW EVSIYRNDEA NDDDDGTSFP YDNGELGSTT 
LTFDSAGELE DGSTSTLSFT DSETGLTIDL DFSDITQTAT STSIEGSANG SAASSSSDYT 
IGSDGVISTV SSDGTTTDTY KIALATVASP DNLEEVGGTA YKVDADSGTV VVGFAGTGSF 
GTIESSTLES SNVDLASELS DMIAAQRAYS ANSKVFQTAA DMLDTVINMV R