| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0425 |
|---|
| Symbol | mviN |
|---|
| ID | 7388440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 364719 |
|---|
| End bp | 366317 |
|---|
| Gene Length | 1599 bp |
|---|
| Protein Length | 532 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643650084 |
|---|
| Product | integral membrane protein MviN |
|---|
| Protein accession | YP_002548299 |
|---|
| Protein GI | 222147342 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0728] Uncharacterized membrane protein, putative virulence factor |
|---|
| TIGRFAM ID | [TIGR01695] integral membrane protein MviN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCTCG TCAAGAAGTT CATCACTGTT GGCGGCGCCA CGCTTGGTAG CCGATTGTTC
GGGTTTGCCC GCGAAACCCT GATGGCGGCA GCGCTTGGCA CTGGGCCGAT GGCCGATGTG
TTTTATGCGG CTTTCCGCTT TCCCAACCTG TTTCGCCGGT TGTTTGCCGA AGGCGCCTTC
AACGCCGCTT TCGTGCCGCT GTTTTCCAAG GAAATCGAGG CGAACGGACT GGACGGCGCC
AAGCGTTTTT CCGAGGAAGT CTTCGGCGTC CTCTTTACCG TCCTGTTGCT GATCACCATC
GCCATGGAGC TTTCCATGCC GCTGCTGGTG CGGTTTGTCA TCGCTCCGGG TTTTGCCGAT
GACGCGGAAA AATTTTCGCT GACCGTGCGG CTTGCCGTGG TGATGTTTCC CTATCTGATG
TGCATGTCGC TGACGGCGAT GCTGAGCGGC ATGCTCAATT CGCTGCATCA CTTTTTCGCC
GCCGCCGTCG CGCCGATCTT TCTCAATCTG GTGATGATCA GCGCACTGTT TTATGCGCTC
TACCATGGTG TCGAGCCTGT CGTGACGGCC TGGTATCTTT CCTGGTCAGT GTTGGTGGCG
GGGATTTTAC AGTTGCTGGT GGTCTATATC GGCGTGCGCC ATGCGGGGAT AAGGCTCGGT
TTCAAATGGC CGAAGATCAC CCCCAACGTG AAACGGTTGC TGGTGCTGGC CGTCCCTGCG
GCGGTGACTG GCGGCATTAC CCAGATCAAC CAGTTGATCG GCCAGGCGAT TGCCTCCTCT
AAGGATGGGG CGATTGCCGC CCTGCAATAT GCCGACCGGA TCTATCAATT GCCTTTGGGC
GTGGTGGGCG TTGCCGTCGG CGTGGTGCTT TTGCCGGAGC TGGCGCGGGC GCTGAAATCC
GACCACCAGC GCGAGGCTTC AACCATTCAG AACCGGTCGA TTGAATTCGT GCTGTTTCTG
ACCCTGCCAG CGGCGGTCGG GCTGTGGGTG CTGTCGGATG ATATCATCCG GGTGCTTTAT
GAGCGCGGCG CGTTTACCGC GCACAATACC GCCATTGTCG CGGCAATCCT CGCCTATTAC
GGCTTGGGCT TGCCCGGTTT CGTGATGATC AAGGCCCTAC AGCCCGGTTT TTACGCCCGC
GAGGATACAA AAACCCCGAT GCGGTTCACC GGCATTTCGG TGGTGGTCAA TTCGGCGCTG
GCCATTTCGC TGTTTCCGCT GTTGCAGGAG CGGGGCATCG CCATTGCAGA AGCGACGGCG
GGCGCGATCA ACACGGTTCT GCTGTTCACC ATGCTGGTAC GGCGCGGACA TTTGCAGGTG
GAATGGGCGC TGGTGTCACG GGCGCTGCGG CTTTTGCTGG CGGCGCTGGC CATGGGGGCG
GCGCTGATGG CGCTGTCGGG CTTTTTCGCG CCGTATATCG GCACCGGTTC ACCCTTCCTG
CATAAGGTGC TGGTGCTGTT CATCCAGATT GGTCTGGCGA TGCTGATCTA TTTCTCGCTG
GCCTTCCTGA TCGGCGGCGC GGATCTTGGC ATGCTGAGAC GCAATCTGAA GCGCAAGGCG
CGCGCGACGC CAAGCGAGGC CGCCGATGAC GCAGAATAG
|
|---|
| Protein sequence | MSLVKKFITV GGATLGSRLF GFARETLMAA ALGTGPMADV FYAAFRFPNL FRRLFAEGAF
NAAFVPLFSK EIEANGLDGA KRFSEEVFGV LFTVLLLITI AMELSMPLLV RFVIAPGFAD
DAEKFSLTVR LAVVMFPYLM CMSLTAMLSG MLNSLHHFFA AAVAPIFLNL VMISALFYAL
YHGVEPVVTA WYLSWSVLVA GILQLLVVYI GVRHAGIRLG FKWPKITPNV KRLLVLAVPA
AVTGGITQIN QLIGQAIASS KDGAIAALQY ADRIYQLPLG VVGVAVGVVL LPELARALKS
DHQREASTIQ NRSIEFVLFL TLPAAVGLWV LSDDIIRVLY ERGAFTAHNT AIVAAILAYY
GLGLPGFVMI KALQPGFYAR EDTKTPMRFT GISVVVNSAL AISLFPLLQE RGIAIAEATA
GAINTVLLFT MLVRRGHLQV EWALVSRALR LLLAALAMGA ALMALSGFFA PYIGTGSPFL
HKVLVLFIQI GLAMLIYFSL AFLIGGADLG MLRRNLKRKA RATPSEAADD AE
|
|---|
| |