Gene Avi_0404 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_0404 
SymbolrpoN 
ID7388425 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011989 
Strand
Start bp346283 
End bp347731 
Gene Length1449 bp 
Protein Length482 aa 
Translation table11 
GC content60% 
IMG OID643650069 
ProductRNA polymerase sigma-54 factor 
Protein accessionYP_002548284 
Protein GI222147327 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0157372 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CTGCTTGAAT TTGCGCCAAA TGACGAAGGA ACAGGCAGCA GCGAACCAGG CACGGATAGC 
GAAGCCCCGC CAGCACCAGC CCCCTCCGAT ACATTGCAGA GTGACTGGTA TGAACATGGT
GGCGATGGCG ATCTGAACGA GCGGCTGGAC GCCAATTTTG GCACGGCCTT TTCCGATGAT
GGCGCCAACC CGAAGACCGA TGCACCCGAA ATGCTTGGCC AGTGGAAATC GATGCCCGGC
GCCCAGGGAG ATGGCGAGGG CTATGACCTG GATGATTTCG TGGCTGGCAA GGTTTCGTTG
CGCGACCATC TCGGCCAGCA ATTGCCTTTC GTACTCTCGT CCGCATCGGA TCGGATGATT
GCGCTGGCCC TGATCGACCA GCTGGACGAG GCCGGATATC TGCGCGCCGA CCTGGATGAG
GTCGCCACTC AGATGGGGGC GTCACGAGAC GATATGGAAC GGATTCTGGC AGCTCTTCAG
ACCATGGAGC CCGCCGGCCT GTTTGCGCGC AGCCTTGGCG AATGCCTGGC CATTCAGCTG
CGCCAGCGCG ACCGGCTGGA CCCGGCCATG GCAGCCCTGA TCGGCAATCT GGATTATCTG
GCCAAGCGTG ACTTTGCGAG CCTGAAGCGG TTATGCGGCG TGGATGAGGA AGACCTGCTC
GACATGCTGG CGGAAATCCG CAAGCTCAAT CCTAAGCCCG GCGCTGGTTT CGAAACCGAT
GCACTGGAAA CAGTTGTGCC CGATATTCTG GTGGCGCCCT CGCTCGAAGG TGGCTGGCTG
GTGGAACTGA ACGCGGAAAC CCTGCCGCGT GTGCTGGTCA ACAATGCCTA TTTCACCGAG
ATCCGCCGCA GCAGCTTGCG AGAAGGCGCC ATGAAGACTG CCAATGGCCA AAGTGGCAAT
AGCAAGACCG GGCAGAGCAA GGCCGAGGGC GAGCAGGCCT TTTTGACGGA TTGCCTGCAA
ACCGCCAATT GGCTGACCCG CAGCCTCGAT CAGCGCGCCA AAACCATCAT GAAGGTGGCA
ACCGAAATCA TTCGCCAGCA GGACGCCTTT CTGCGCCATG GGGTCGACCA TCTGCGTCCG
CTGAACCTGA AGACGGTGGC CGACGCCATC AAAATGCACG AGTCCACCGT CAGCCGCGTC
ACATCCAACA AATATATGCT GACACCACGT GGGCTGTTCG AGCTGAAATA TTTCTTCAGC
GTCTCCATCG GCTCGGCAGA AGGCGGTGAC AGCCATTCAG CTGAGGCGGT TCGTCATCGT
ATCCGCATGT TGATTGCTCA AGAAAGCCCC GAGAATATCC TCTCAGACGA CGATATTGTC
GAAAGCCTGA AAAACGGCGG CGTCGAGCTT GCCCGCCGCA CGGTTGCCAA ATATCGCGAA
GCAATGAACA TCGCCTCCTC CGTCCAGAGG CGCCGGGAAA AGCGCGCCCT GGCGCGGAAC
CCGGGCTGA
 
Protein sequence
MLEFAPNDEG TGSSEPGTDS EAPPAPAPSD TLQSDWYEHG GDGDLNERLD ANFGTAFSDD 
GANPKTDAPE MLGQWKSMPG AQGDGEGYDL DDFVAGKVSL RDHLGQQLPF VLSSASDRMI
ALALIDQLDE AGYLRADLDE VATQMGASRD DMERILAALQ TMEPAGLFAR SLGECLAIQL
RQRDRLDPAM AALIGNLDYL AKRDFASLKR LCGVDEEDLL DMLAEIRKLN PKPGAGFETD
ALETVVPDIL VAPSLEGGWL VELNAETLPR VLVNNAYFTE IRRSSLREGA MKTANGQSGN
SKTGQSKAEG EQAFLTDCLQ TANWLTRSLD QRAKTIMKVA TEIIRQQDAF LRHGVDHLRP
LNLKTVADAI KMHESTVSRV TSNKYMLTPR GLFELKYFFS VSIGSAEGGD SHSAEAVRHR
IRMLIAQESP ENILSDDDIV ESLKNGGVEL ARRTVAKYRE AMNIASSVQR RREKRALARN
PG