Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_0404 |
Symbol | rpoN |
ID | 7388425 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011989 |
Strand | - |
Start bp | 346283 |
End bp | 347731 |
Gene Length | 1449 bp |
Protein Length | 482 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643650069 |
Product | RNA polymerase sigma-54 factor |
Protein accession | YP_002548284 |
Protein GI | 222147327 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0157372 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | CTGCTTGAAT TTGCGCCAAA TGACGAAGGA ACAGGCAGCA GCGAACCAGG CACGGATAGC GAAGCCCCGC CAGCACCAGC CCCCTCCGAT ACATTGCAGA GTGACTGGTA TGAACATGGT GGCGATGGCG ATCTGAACGA GCGGCTGGAC GCCAATTTTG GCACGGCCTT TTCCGATGAT GGCGCCAACC CGAAGACCGA TGCACCCGAA ATGCTTGGCC AGTGGAAATC GATGCCCGGC GCCCAGGGAG ATGGCGAGGG CTATGACCTG GATGATTTCG TGGCTGGCAA GGTTTCGTTG CGCGACCATC TCGGCCAGCA ATTGCCTTTC GTACTCTCGT CCGCATCGGA TCGGATGATT GCGCTGGCCC TGATCGACCA GCTGGACGAG GCCGGATATC TGCGCGCCGA CCTGGATGAG GTCGCCACTC AGATGGGGGC GTCACGAGAC GATATGGAAC GGATTCTGGC AGCTCTTCAG ACCATGGAGC CCGCCGGCCT GTTTGCGCGC AGCCTTGGCG AATGCCTGGC CATTCAGCTG CGCCAGCGCG ACCGGCTGGA CCCGGCCATG GCAGCCCTGA TCGGCAATCT GGATTATCTG GCCAAGCGTG ACTTTGCGAG CCTGAAGCGG TTATGCGGCG TGGATGAGGA AGACCTGCTC GACATGCTGG CGGAAATCCG CAAGCTCAAT CCTAAGCCCG GCGCTGGTTT CGAAACCGAT GCACTGGAAA CAGTTGTGCC CGATATTCTG GTGGCGCCCT CGCTCGAAGG TGGCTGGCTG GTGGAACTGA ACGCGGAAAC CCTGCCGCGT GTGCTGGTCA ACAATGCCTA TTTCACCGAG ATCCGCCGCA GCAGCTTGCG AGAAGGCGCC ATGAAGACTG CCAATGGCCA AAGTGGCAAT AGCAAGACCG GGCAGAGCAA GGCCGAGGGC GAGCAGGCCT TTTTGACGGA TTGCCTGCAA ACCGCCAATT GGCTGACCCG CAGCCTCGAT CAGCGCGCCA AAACCATCAT GAAGGTGGCA ACCGAAATCA TTCGCCAGCA GGACGCCTTT CTGCGCCATG GGGTCGACCA TCTGCGTCCG CTGAACCTGA AGACGGTGGC CGACGCCATC AAAATGCACG AGTCCACCGT CAGCCGCGTC ACATCCAACA AATATATGCT GACACCACGT GGGCTGTTCG AGCTGAAATA TTTCTTCAGC GTCTCCATCG GCTCGGCAGA AGGCGGTGAC AGCCATTCAG CTGAGGCGGT TCGTCATCGT ATCCGCATGT TGATTGCTCA AGAAAGCCCC GAGAATATCC TCTCAGACGA CGATATTGTC GAAAGCCTGA AAAACGGCGG CGTCGAGCTT GCCCGCCGCA CGGTTGCCAA ATATCGCGAA GCAATGAACA TCGCCTCCTC CGTCCAGAGG CGCCGGGAAA AGCGCGCCCT GGCGCGGAAC CCGGGCTGA
|
Protein sequence | MLEFAPNDEG TGSSEPGTDS EAPPAPAPSD TLQSDWYEHG GDGDLNERLD ANFGTAFSDD GANPKTDAPE MLGQWKSMPG AQGDGEGYDL DDFVAGKVSL RDHLGQQLPF VLSSASDRMI ALALIDQLDE AGYLRADLDE VATQMGASRD DMERILAALQ TMEPAGLFAR SLGECLAIQL RQRDRLDPAM AALIGNLDYL AKRDFASLKR LCGVDEEDLL DMLAEIRKLN PKPGAGFETD ALETVVPDIL VAPSLEGGWL VELNAETLPR VLVNNAYFTE IRRSSLREGA MKTANGQSGN SKTGQSKAEG EQAFLTDCLQ TANWLTRSLD QRAKTIMKVA TEIIRQQDAF LRHGVDHLRP LNLKTVADAI KMHESTVSRV TSNKYMLTPR GLFELKYFFS VSIGSAEGGD SHSAEAVRHR IRMLIAQESP ENILSDDDIV ESLKNGGVEL ARRTVAKYRE AMNIASSVQR RREKRALARN PG
|
| |