| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0387 |
|---|
| Symbol | ubiB |
|---|
| ID | 7387828 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | - |
|---|
| Start bp | 331220 |
|---|
| End bp | 332803 |
|---|
| Gene Length | 1584 bp |
|---|
| Protein Length | 527 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643650054 |
|---|
| Product | 2-polyprenylphenol 6-hydroxylase |
|---|
| Protein accession | YP_002548269 |
|---|
| Protein GI | 222147312 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0661] Predicted unusual protein kinase |
|---|
| TIGRFAM ID | [TIGR01982] 2-polyprenylphenol 6-hydroxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.00400126 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACAG TCAGCGCTTA TTTCAGGTTG GCCCGTGTCG GCTGGATTCT CGTTCGCGAA
GGTGTCGTCT CGGCGCTGCC GTCCGAAGGA CTGCCGCCGA GCGTCGGCTT TGCAAAGAAA
GTCGCCGCAG TCTTCGAGCG CAAGCGCGCC CGAGGCACAT TGCGGTCCGA CCGCCTGTCC
CAAGCCGTCG AGCGGCTGGG GCCGTCCTAC GCCAAGATTG GCCAGTTCCT GGCGACCCGG
CCGGATGTGG TCGGCGCCGA ACTCGCCGAT GATCTAACCG GATTGCAGGA CCGCATGGCG
TTCTTTCCAA CGGGAGAGGC CAAGGCATCG ATTGAATTGT CGCTTGGGCG TCCGGTCGAG
GAGCTTTATG CCAGTTTCGG CGAGCCGATT GCCGCTGCCT CCATCGCCCA GGTGCATCCC
TGCATGGTGG AAACGCCTGT CGGCGTGAAA CAGGTTGCCG TCAAGGTCAT CCGTCCCGGC
GTGCGCCGCC GTTTCGCTGC TGATCTCGAA GTCATGTATC TCGTGTCGCA TTTGCAGGAA
ATGCTGCTGC CGCAGACCCG CAGATTGCGC CCCGTCGAGG TGACGAAAAC GCTTGAGCAG
ACCACAAAAG TGGAAATGGA CTTGCGGCTC GAGGCCGCCG CTTTGTCGGA ACTGGGCGAA
AACACCGCCA GCGATCCCGG CTTCAGGGTC CCGCAGGTCG ATTGGGAACG CACGGGCCGC
GACGTCATCA CCATGGAATG GATCGACGGC GTCAAGATGT CCGATGTCGA GGCGCTGAAG
GCCGCCGGTC ATGATCTCGA TGCGCTGGCC GATACGTTGA TCCAGTCCTT CCTGCGCCAT
ACGTTGCGCG ATGGCTTCTT CCATGCCGAC ATGCATCCGG GCAATCTGTT CGTCGATCCC
GCAGGCATGA TCGTTGCCGT GGACATGGGC ATTTGCGGGC GGCTCGGCAA GAAAGAGCGG
CGGTTTCTGG CGGAAATTCT CTATGGCTTC ATCACCCGCG ATTACATGCG GGTAGCGGAA
GTGCATTTCG AGGCTGGCTA TGTGCCTTCC CACCACAATA TGGCCAGTTT TGCCCAGGCG
ATCCGGGCGA TCGGCGAGCC CATTCACGGC CAGCCTGCCG AAACCATCTC CATGGCGCGG
TTGCTGACGC TGCTGTTTGA AGTCACCGAA CTGTTCGACA TGCAGACCCG GCCGGAACTG
GTGATGCTTC AAAAAACCAT GGTGGTGGTC GAAGGCGTCT CGCGGATGCT CAATCCACGG
TTCAACATGT GGAAGGCATC AGAGCCCGTC GTCGCGGACT GGATCAAAGC CAATCTCGGT
CCAAAACGCA TCGTCACCGA CATGAAGGAC GGCATTCGCG CCGCAGTGCG GGTGGCGGAA
GCCCTGCCGG AAATCGCAGC CAAAACCGAG AAATTCCATA GTGAATTGAT GCAGATGAGC
GAGCATGGAC TGCGTTTCGA CGAGAGCACC ACCGATGCCA TCGGCAGGGC GCAGGCACGC
CACAGTCGCT CAGGCCGACT GGCCCTCTGG GTGATTGCGC TCTGCCTGCT GTTCATTGCG
TTTCAACTGG GTCATGGCGG GTAG
|
|---|
| Protein sequence | MSTVSAYFRL ARVGWILVRE GVVSALPSEG LPPSVGFAKK VAAVFERKRA RGTLRSDRLS
QAVERLGPSY AKIGQFLATR PDVVGAELAD DLTGLQDRMA FFPTGEAKAS IELSLGRPVE
ELYASFGEPI AAASIAQVHP CMVETPVGVK QVAVKVIRPG VRRRFAADLE VMYLVSHLQE
MLLPQTRRLR PVEVTKTLEQ TTKVEMDLRL EAAALSELGE NTASDPGFRV PQVDWERTGR
DVITMEWIDG VKMSDVEALK AAGHDLDALA DTLIQSFLRH TLRDGFFHAD MHPGNLFVDP
AGMIVAVDMG ICGRLGKKER RFLAEILYGF ITRDYMRVAE VHFEAGYVPS HHNMASFAQA
IRAIGEPIHG QPAETISMAR LLTLLFEVTE LFDMQTRPEL VMLQKTMVVV EGVSRMLNPR
FNMWKASEPV VADWIKANLG PKRIVTDMKD GIRAAVRVAE ALPEIAAKTE KFHSELMQMS
EHGLRFDEST TDAIGRAQAR HSRSGRLALW VIALCLLFIA FQLGHGG
|
|---|
| |