| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0290 |
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| Symbol | |
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| ID | 7387586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | - |
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| Start bp | 245880 |
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| End bp | 246668 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643649976 |
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| Product | hypothetical protein |
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| Protein accession | YP_002548191 |
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| Protein GI | 222147234 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.422068 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCGACCA GCTCGATCCC GAGCATGACC AAGCCCGTTG ATCAGATGAC GCCCGGCGAA
ATTGCCATGG CAACGGACAG CATGGGCCGG GCCTACGAGA AAAATCGCAA GAACGCGCAG
GTCGGAGTGG CCTATGCCAA TCTGTTGCAG ATGGGCGGCC GCGCGCCGCA GGCTTTGTCT
GTCATGCAGC AGGTGGTGAT TGCCAATCCA AATGACCGCC AGGTTCTCGC CGCCTACGGC
AAGGCGCAGG CCGCTGCCGG CCAGCTGGAA CAGGCCTTGA CGACGATTGG CCGTGCCCAG
ACCCCGGATC GGCCCGATTG GCGGCTTTAT TCGGCCCAGG GCGCGGTTCT CGACCAGCTT
GGACGCACCC AGGAGGCGCG TGCCGCCTAT CAGCAGGCTT TGCAGATCCA GCCCAACGAG
CCTTCGATCC TGTCGAATAT GGGCATGTCC TATCTGCTCG GCGGCGACCT GAAAACCGCT
GAAACCTACC TGCGCAGCGC ATCCCAGCAA CCCGGCGCCG ATAGCCGGGT TCGCCAGAAC
CTGGCCCTTG TCGTCGGCCT TCAAGGCCGC TTCGACGAGG CCGACAGGAT TGCCAGAGCC
GAACTTTCAC CCGACCAGGC TGAGGCGAAT GTGGCCTATC TGCGCACCAT GTTGAACCAG
CAGAACACCT GGAAACAATT GGCGTCCAAG GATACAGCTC AGAATCCGGC CAGGAAACCT
GCCCAGACCC CTGCTAAGGA TCAGACGCCC GTCAAGGATA CGAGCCTGGC GGCAACCCCT
CTTCGGTAA
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| Protein sequence | MSTSSIPSMT KPVDQMTPGE IAMATDSMGR AYEKNRKNAQ VGVAYANLLQ MGGRAPQALS
VMQQVVIANP NDRQVLAAYG KAQAAAGQLE QALTTIGRAQ TPDRPDWRLY SAQGAVLDQL
GRTQEARAAY QQALQIQPNE PSILSNMGMS YLLGGDLKTA ETYLRSASQQ PGADSRVRQN
LALVVGLQGR FDEADRIARA ELSPDQAEAN VAYLRTMLNQ QNTWKQLASK DTAQNPARKP
AQTPAKDQTP VKDTSLAATP LR
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