| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_0256 |
|---|
| Symbol | |
|---|
| ID | 7387562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011989 |
|---|
| Strand | + |
|---|
| Start bp | 223555 |
|---|
| End bp | 224547 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643649952 |
|---|
| Product | membrane lipoprotein |
|---|
| Protein accession | YP_002548167 |
|---|
| Protein GI | 222147210 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAT CCCTAATCAC GCTGTTTGCC ATGGCCGCCA TGTCGGCCTC GGCGCTCGCT
GCCGACATCA AGCCGGCGCT CGTCTATGGC ACCGGCGGCA AGTTCGACAA ATCCTTCAAC
GAGGCAGCAT TCAACGGCGC GGACAAGTTC GAGAAGGAAA CCGGCATCAA GTTCCGGGAT
TTCGAACCGA CCAGCGATAC CCAGGGTGAA CAGGCGATCC GCAATTTTGC CTCCAAGGGC
TTCAGCCCGA TTGTCGCGGT ATCCTTCGCC TGGACCTCGG CCATGGAAAA GGTTGCGACC
GAATTTCCAG ACACCAAATT CGTGATCGTC GATTCGGTCG TGGATAAGCC GAATGTCCGC
TCGGTGGTCT TCAAGGAAGA AGAAGGCTCG TATCTGGTTG GTCTGCTGGC CGGTATGGCC
TCCAAAACCG GCAAAGTCAG CTTTGTCGGC GGCATGGACA TTCCGCTGAT CCGCAAGTTC
GAATGTGGCT ATGAGCAGGG CGCCCGCGCT GCCAATCCAA AGATCGAAGT GTTGCAGAAC
ATGGTTGGCA CCACGGGTGC TGCCTGGAAC GATCCGGTTC GCGCTGGCGA GTTGACCAAG
AACCAGATGG ATCAGGGCTC CGACGTGATC TACGCGGCGG CCGGTGCATC CGGCATGGGT
GTGTTGCAGA CCGCAGCCGA TGCCAAGAAA CTGTCGATCG GCGTCGATTC CAACCAGAAC
CATCTGCATC CCGGCTCGGT CCTGACCTCG ATGGTCAAGC GCGTCGATCT TGCTGTCTAT
AACGCTTATG CCGATGCCAA GGCTGACAAG TTCAAGCCCG GCCTTGAAGT GCTTGGCGTC
AAGGAAGACG GCGTGATGGC AGCGCTCGAT GACAATAACA AGGCGTTGAT TACACCGGAA
ATGAAGGCGG CTGTCGAAAA GGCCCGCGCC GATATCATTG CAGGCACAGT CAAGGTTCAT
GATTACATGG CAGACAATTC CTGCCCGAAG TGA
|
|---|
| Protein sequence | MKKSLITLFA MAAMSASALA ADIKPALVYG TGGKFDKSFN EAAFNGADKF EKETGIKFRD
FEPTSDTQGE QAIRNFASKG FSPIVAVSFA WTSAMEKVAT EFPDTKFVIV DSVVDKPNVR
SVVFKEEEGS YLVGLLAGMA SKTGKVSFVG GMDIPLIRKF ECGYEQGARA ANPKIEVLQN
MVGTTGAAWN DPVRAGELTK NQMDQGSDVI YAAAGASGMG VLQTAADAKK LSIGVDSNQN
HLHPGSVLTS MVKRVDLAVY NAYADAKADK FKPGLEVLGV KEDGVMAALD DNNKALITPE
MKAAVEKARA DIIAGTVKVH DYMADNSCPK
|
|---|
| |